Co-expression analysis

Gene ID	GmaAffx.90950.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g38630: - (HF=9e-18)
Module size	24 genes
NF	0.32
%ile	59.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	88.1	0.97	GmaAffx.90950.1.S1_at	CF806675	-	-	9e-18	At2g38630	-	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.98	GmaAffx.2763.1.S1_at	BU550943	-	-	5e+0	At5g67600	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.98	GmaAffx.14834.1.S1_at	AW350241	-	-	1e-3	At5g51340	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.98	GmaAffx.10720.1.S1_at	BU765494	-	-	3e-5	At3g06170	TMS membrane family protein / tumour differentially expressed (TDE) family protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.98	Gma.6824.2.S1_at	BE661743	-	-	6e-4	At5g32440	-	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	GmaAffx.661.1.S1_at	BI969786	-	-	2e+0	At1g67080	ABA4 (abscisic acid (ABA)-deficient 4)	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	Gma.3921.2.S1_x_at	BG790883	-	-	1e-27	At1g80950	phospholipid/glycerol acyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.98	GmaAffx.644.1.S1_at	BE659523	-	-	4e-60	At2g32980	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.98	GmaAffx.7280.1.S1_at	AW459314	-	-	8e-9	At4g34040	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.98	Gma.8066.1.A1_at	BQ611504	-	-	1e-1	At1g54170	CID3 (CTC-Interacting Domain 3)	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.98	Gma.5758.1.S1_at	AW317204	-	-	2e-13	At5g57580	calmodulin-binding protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.98	Gma.5692.1.S1_at	BM522647	-	-	3e-5	At5g48640	cyclin family protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.98	Gma.13242.1.S1_at	CD396483	NAC domain protein	-	1e-5	At5g64060	anac103 (Arabidopsis NAC domain containing protein 103)	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.98	Gma.5582.1.S1_at	AW598007	-	-	2e-4	At4g32050	neurochondrin family protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.98	Gma.5056.1.S1_at	BI970673	-	-	1e-2	At3g22170	FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3)	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.98	Gma.13320.1.S1_at	BE802768	-	-	4e-7	At5g64180	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.98	GmaAffx.51562.1.S1_at	BE822242	-	-	4e-1	At5g67390	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.98	Gma.2119.2.A1_at	BM525405	-	-	1e-8	At2g17200	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.98	Gma.8652.1.A1_at	CD407809	-	-	3e-1	At1g48160	signal recognition particle 19 kDa protein, putative / SRP19, putative	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.99	Gma.8823.2.S1_at	BU765654	-	-	1e-6	At5g45560	pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.98	Gma.1659.1.S1_at	AW132168	-	-	2e-10	At3g07100	protein transport protein Sec24, putative	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.98	Gma.15852.1.S1_at	CD411038	-	-	3e-23	At5g58060	YKT61	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.98	GmaAffx.2818.1.S1_at	BE800363	-	-	6e-16	At1g21170	SEC5B	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.98	GmaAffx.61837.1.S1_at	BU762817	-	-	2e-11	At3g25840	protein kinase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	97.4	GSM293126	3_C038.1O.R9O1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM293105	20_C054.1O.R9O3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM292258	78_C034.1B.R9B3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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