Co-expression analysis

Gene ID	GmaAffx.90612.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g63470: NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4) (HF=2e-14)
Module size	6 genes
NF	0.55
%ile	86.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.8	0.96	GmaAffx.90612.1.S1_at	CF806337	-	-	2e-14	At5g63470	NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.97	GmaAffx.83815.1.S1_s_at	BG404904	-	-	1e+0	At1g04330	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.96	GmaAffx.92005.1.S1_s_at	CF807730	epsilon2-COP	-	2e-21	At2g34840	coatomer protein epsilon subunit family protein / COPE family protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.97	Gma.8155.1.S1_at	BQ741444	-	-	6e-15	At2g36680	-	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.97	Gma.1305.1.S1_at	CD411822	-	-	9e-2	At5g39950	ATTRX2 (THIOREDOXIN 2)	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.96	GmaAffx.50783.1.S1_at	BM092102	-	-	1e+1	At5g66590	allergen V5/Tpx-1-related family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
21.0	99.7	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
12.8	99.5	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
7.5	98.9	GSM292230	28_1045.1B.R025L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.1	98.8	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
6.6	98.7	GSM308559	Mature Soybean (Glycine max) pollen grains Replicate 2	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
5.6	98.3	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2	98.1	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9	98.0	GSM293772	18_2164.2D.R027P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM294268	23_2428.2I.R297P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM292198	5_C008.1A.V7A2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM293077	77_1077.1N.R046L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM292748	12_1418.1K.R258P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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