Co-expression analysis

Gene ID GmaAffx.90559.1.S1_s_at
Gene name
Homology with ArabidopsisSimilar to At3g48890: ATMP2 (HF=2e-23)
Module size 6 genes
NF 0.60
%ile 89.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8392.50.98GmaAffx.90559.1.S1_s_atCF806284--2e-23At3g48890ATMP2O.I.H.G.S.X.
0.6080.70.98GmaAffx.90559.1.S1_x_atCF806284--2e-23At3g48890ATMP2O.I.H.G.S.X.
0.5071.70.98GmaAffx.42255.1.S1_s_atBQ612697--3e+0At2g04925-O.I.H.G.S.X.
0.5071.70.98GmaAffx.90559.1.S1_atCF806284--2e-23At3g48890ATMP2O.I.H.G.S.X.
0.5071.70.98Gma.4549.1.S1_s_atBI974530--2e-6At2g25110SDF2 (STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN PRECURSOR)O.I.H.G.S.X.
0.3346.10.98Gma.5057.2.S1_x_atBE475334--7e-21At5g13430ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.098.0GSM309531storage protein suppression expt, RNAi biol rep2, tech rep2GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
4.998.0GSM309557storage protein suppression expt, RNAi biol rep1, tech rep2GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
4.998.0GSM309530storage protein suppression expt, RNAi biol rep2, tech rep1GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
4.597.7GSM309529storage protein suppression expt, RNAi biol rep1, tech rep1GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
3.696.7GSM29292395_1465.1L.R283L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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