Co-expression analysis

Gene ID	GmaAffx.90541.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At5g22060: ATJ2 (HF=6e-18)
Module size	31 genes
NF	0.34
%ile	61.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	92.6	0.94	GmaAffx.90541.1.S1_s_at	CF806266	-	-	6e-18	At5g22060	ATJ2	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.97	GmaAffx.86030.1.S1_at	CA784373	-	-	1e-21	At2g02180	TOM3	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.96	GmaAffx.90275.1.S1_s_at	CF806000	-	-	8e-2	At3g13460	ECT2	O.I.	H.G.	S.X.	Please select
0.52	73.1	0.96	GmaAffx.93614.1.S1_at	CF809339	-	-	1e+0	At3g54680	proteophosphoglycan-related	O.I.	H.G.	S.X.	Please select
0.45	63.9	0.97	Gma.17976.2.S1_at	BU763811	-	-	4e+0	At5g52040	ATRSP41	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.96	Gma.10915.3.S1_s_at	BG154267	-	-	4e-22	At2g33120	SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.97	GmaAffx.90275.1.S1_at	CF806000	-	-	8e-2	At3g13460	ECT2	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.97	Gma.6454.2.S1_x_at	BQ610741	-	-	7e-8	At5g25265	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.97	GmaAffx.92773.1.S1_s_at	CF808498	-	-	4e-34	At4g31720	TAFII15 (TBP-ASSOCIATED FACTOR II 15)	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.97	Gma.7420.2.S1_a_at	AI460913	-	-	3e-56	At1g17370	UBP1B (oligouridylate binding protein 1B)	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.98	GmaAffx.80509.1.S1_at	BQ610707	-	-	2e-1	At5g63520	-	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.96	GmaAffx.81425.1.S1_at	BG352513	-	-	2e-12	At2g28600	ATP binding / ATP-dependent helicase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.97	Gma.16711.3.S1_a_at	AI437814	-	-	7e-2	At5g27541	-	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.97	Gma.5783.3.S1_at	BM271247	-	-	1e-59	At5g55260	PPX2 (PROTEIN PHOSPHATASE X 2)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.97	GmaAffx.83698.1.S1_at	BU965056	-	-	1e-72	At1g50920	GTP-binding protein-related	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.97	GmaAffx.92822.1.S1_s_at	CF808547	-	-	9e-2	At1g57780	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.96	GmaAffx.45074.2.S1_at	BI425242	-	-	2e-30	At2g39130	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.97	GmaAffx.34241.1.S1_at	BU089662	-	-	1e-2	At1g54080	oligouridylate-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.96	Gma.16462.2.S1_at	BE475088	-	-	2e-20	At1g21760	FBP7 (F-BOX PROTEIN 7)	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.97	GmaAffx.74664.1.S1_at	BU965032	-	-	1e-2	At1g54170	CID3 (CTC-Interacting Domain 3)	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.98	Gma.8643.2.S1_at	BG652817	-	-	1e-9	At3g09740	SYP71 (SYNTAXIN OF PLANTS 71)	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.97	Gma.1752.3.S1_a_at	AW569205	-	-	5e-2	At4g04860	DER2.2 (DERLIN-2.2)	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.97	GmaAffx.21491.1.S1_at	AW832637	-	-	3e+0	At5g49480	ATCP1 (Ca2+-binding protein 1)	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.97	GmaAffx.91844.1.S1_s_at	CF807569	-	-	1e+0	At2g23320	WRKY15	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.97	GmaAffx.75492.1.S1_at	BG507702	-	-	4e-34	At2g23140	binding / ubiquitin-protein ligase	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.96	GmaAffx.88130.1.S1_at	BU082486	-	-	1e-17	At1g04400	CRY2 (CRYPTOCHROME 2)	O.I.	H.G.	S.X.	Please select
0.21	26.6	0.97	GmaAffx.67457.2.S1_at	BE804564	-	-	3e-2	At4g08980	F-box family protein (FBW2)	O.I.	H.G.	S.X.	Please select
0.20	25.1	0.97	Gma.11155.1.S1_at	AW780535	-	-	5e-8	At2g40960	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.98	GmaAffx.69670.1.S1_at	BQ742118	-	-	7e-5	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.97	Gma.3568.2.S1_at	BM308236	-	-	3e-42	At2g44610	RAB6A	O.I.	H.G.	S.X.	Please select
0.12	15.1	0.98	Gma.10802.1.S1_a_at	BI969275	Clone GMFP1 isoprenylated protein	-	4e-12	At3g44110	ATJ3	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.6	96.7	GSM294132	86_3112.2G.R9G1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM293060	61_C034.1N.R9N3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM293911	5_2236.2E.R249P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM292890	65_C202.1L.R9L1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM293419	10_C108.1R.R9R3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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