Co-expression analysis

Gene ID	GmaAffx.89678.1.A1_s_at
Gene name	CDNA for glutamine synthetase (3' region)
Homology with Arabidopsis	Similar to At1g65352: - (HF=9e-2)
Module size	18 genes
NF	0.51
%ile	82.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.1	0.92	GmaAffx.89678.1.A1_s_at	CK606714	CDNA for glutamine synthetase (3' region)	-	9e-2	At1g65352	-	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.93	Gma.2534.7.A1_x_at	AW133169	-	-	2e-30	At4g02890	UBQ14	O.I.	H.G.	S.X.	Please select
0.59	79.5	0.95	GmaAffx.90695.1.S1_at	CF806420	Profilin, PRO2	-	6e-18	At2g19760	PRF1 (PROFILIN 1)	O.I.	H.G.	S.X.	Please select
0.58	78.8	0.94	GmaAffx.91810.1.A1_s_at	CF807535	-	-	2e-69	At5g58710	ROC7	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.94	GmaAffx.90193.1.A1_at	CF806765	-	-	8e-21	At4g31170	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.95	GmaAffx.91827.1.S1_at	CF807552	-	-	1e-44	At3g13920	EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1)	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.94	GmaAffx.90705.1.A1_s_at	CF809069	-	-	2e-52	At4g27130	eukaryotic translation initiation factor SUI1, putative	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.95	GmaAffx.89982.1.A1_at	CF807628	-	-	4e-29	At2g18600	RUB1-conjugating enzyme, putative	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.94	GmaAffx.90181.1.A1_at	CF805906	-	-	3e-42	At3g12110	ACT11 (actin-11)	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.95	GmaAffx.92634.1.S1_at	CF808359	-	-	3e-60	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.95	GmaAffx.90218.1.S1_at	CF805943	SGT1-2	-	7e-12	At4g11260	SGT1B	O.I.	H.G.	S.X.	Please select
0.52	73.1	0.93	Gma.6289.3.A1_at	BM139972	-	-	3e+0	At2g29350	SAG13	O.I.	H.G.	S.X.	Please select
0.52	73.1	0.95	GmaAffx.89982.1.A1_s_at	CF807628	-	-	4e-29	At2g18600	RUB1-conjugating enzyme, putative	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.94	GmaAffx.90454.1.S1_at	CF806179	-	-	5e-23	At2g39990	EIF2	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.95	GmaAffx.89649.1.A1_at	CK606251	-	-	1e-11	At2g31570	ATGPX2 (GLUTATHIONE PEROXIDASE 2)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.94	GmaAffx.88908.1.S1_at	CK605775	-	-	2e-28	At5g59880	ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.93	GmaAffx.91277.1.A1_x_at	CF807002	-	-	3e-104	At1g23490	ATARF1 (ADP-RIBOSYLATION FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.94	GmaAffx.76522.1.A1_at	BE661335	-	-	7e-8	At3g13340	WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	98.6	GSM292163	18-1009.1A.R006L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.1	98.5	GSM293772	18_2164.2D.R027P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.9	98.5	GSM292198	5_C008.1A.V7A2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.9	98.5	GSM292207	7-1011.1A.R007U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4	97.6	GSM293278	62_1235.1P.R144L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM292892	67_1464.1L.R282P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM244926	7_SLO.I1W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.7	96.8	GSM292872	49_1469.1L.R285U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM293911	5_2236.2E.R249P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293285	69_1226.1P.R138P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM293284	68_1533.1P.R026L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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