Co-expression analysis

Gene ID	GmaAffx.89508.1.A1_s_at
Gene name
Homology with Arabidopsis	Similar to At3g10340: PAL4 (Phenylalanine ammonia-lyase 4) (HF=4e-1)
Module size	8 genes
NF	0.87
%ile	99.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	91.9	0.97	GmaAffx.89508.1.A1_s_at	CK606172	-	-	4e-1	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please select
0.88	93.4	0.97	Gma.4300.3.S1_s_at	AI443042	chalcone synthase	-	1e-5	At5g13930	TT4 (TRANSPARENT TESTA 4)	O.I.	H.G.	S.X.	Please select
0.86	93.0	0.98	GmaAffx.37677.1.S1_s_at	BE022626	HIDH mRNA for 2-hydroxyisoflavanone dehydratase	-	3e-1	At2g30050	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.82	91.9	0.98	GmaAffx.92722.1.S1_at	CF807561	2-hydroxyisoflavanone dehydratase	-	6e-1	At2g30050	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.82	91.9	0.98	Gma.4300.3.S1_x_at	AI443042	chalcone synthase	-	1e-5	At5g13930	TT4 (TRANSPARENT TESTA 4)	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.98	Gma.4300.1.S1_s_at	S46989.1	chalcone synthase	-	5e-29	At5g13930	TT4 (TRANSPARENT TESTA 4)	O.I.	H.G.	S.X.	Please select
0.77	90.3	0.98	Gma.2308.1.S1_s_at	AF022462.1	isoflavone synthase 2	-	6e-2	At1g67195	MIR414 (MICRORNA 414)	O.I.	H.G.	S.X.	Please select
0.71	87.8	0.98	Gma.15492.1.S1_s_at	AF276302.1	chalcone isomerase	-	2e+0	At1g52510	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	96.0	GSM293553	67_3017.2A.R9A3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM171699	3_W.I.I.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
3.1	95.8	GSM171632	18_W.E.I.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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