Co-expression analysis

Gene ID	GmaAffx.89491.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g25355: exonuclease-related (HF=1e+0)
Module size	6 genes
NF	0.66
%ile	93.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.1	0.95	GmaAffx.89491.1.A1_at	CK606189	-	-	1e+0	At2g25355	exonuclease-related	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.95	GmaAffx.93546.1.S1_at	CF806160	-	-	4e-13	At1g02680	TAF13 (TBP-ASSOCIATED FACTOR 13)	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.95	GmaAffx.92911.1.S1_at	CF808636	Transcription factor TFIIB	-	7e-45	At3g10330	transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.95	GmaAffx.93597.1.S1_at	CF809322	-	-	5e+0	At4g37235	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.95	GmaAffx.92292.1.S1_at	CF808017	-	-	6e-2	At3g19090	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.95	GmaAffx.92207.1.S1_at	CF807924	-	-	6e-24	At1g54320	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.4	98.6	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM293772	18_2164.2D.R027P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM292198	5_C008.1A.V7A2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM191087	Soybean_Cotyledon_II1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.8	97.0	GSM292163	18-1009.1A.R006L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM201130	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.6	96.7	GSM292892	67_1464.1L.R282P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
3.5	96.6	GSM292207	7-1011.1A.R007U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM147944	Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.4	96.4	GSM292169	24_1018.1A.R010P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM191088	Soybean_Cotyledon_II2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.3	96.2	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM292825	82_C184.1K.R9K1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM201118	Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.0	95.6	GSM294489	54_3198.2K.R9K3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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