Co-expression analysis

Gene ID	GmaAffx.89425.1.A1_s_at
Gene name
Homology with Arabidopsis	Similar to At5g05110: cysteine protease inhibitor, putative / cystatin, putative (HF=4e-1)
Module size	13 genes
NF	0.71
%ile	95.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	89.5	0.84	GmaAffx.89425.1.A1_s_at	CK606255	-	-	4e-1	At5g05110	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.	Please select
0.81	91.7	0.90	GmaAffx.89665.1.A1_s_at	CK606059	-	-	5e+0	At3g17350	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	90.3	0.89	soybean_rRNA_1721_at	soybean_rRNA_1721	-	-	1e+0	At3g56290	unknown protein	O.I.	H.G.	S.X.	Please select
0.72	88.1	0.91	soybean_rRNA_1692_at	soybean_rRNA_1692	-	-	2e+1	Atmg00030	-	O.I.	H.G.	S.X.	Please select
0.72	88.1	0.92	soybean_rRNA_1665_at	soybean_rRNA_1665	-	-	2e-2	At3g50390	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.72	88.1	0.92	Gma.17620.1.S1_s_at	AI736755	-	-	2e+1	At5g67490	unknown protein	O.I.	H.G.	S.X.	Please select
0.70	87.1	0.93	PsAffx.CL3Contig2_s_at	PsAffx.CL3Contig2	-	-	3e+0	At5g35520	MIS12 (MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE)	O.I.	H.G.	S.X.	Please select
0.69	86.8	0.93	GmaAffx.89786.1.A1_s_at	CK605840	-	-	7e+0	At5g09711	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.91	soybean_rRNA_718_at	soybean_rRNA_718	-	-	2e+1	At1g07350	transformer serine/arginine-rich ribonucleoprotein, putative	O.I.	H.G.	S.X.	Please select
0.65	83.8	0.85	soybean_rRNA_918_RC_at	soybean_rRNA_918_RC	-	-	5e+0	At5g48657	defense protein-related	O.I.	H.G.	S.X.	Please select
0.65	83.8	0.90	soybean_rRNA_838_at	soybean_rRNA_838	-	-	1e+0	At4g27700	rhodanese-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.86	soybean_rRNA_1692_RC_at	soybean_rRNA_1692_RC	-	-	2e+1	Atmg00030	-	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.82	GmaAffx.1301.14.S1_s_at	BE822937	-	-	5e+0	At5g50440	MEMB12 (MEMBRIN 12)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.8	99.6	GSM147938	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
13.6	99.5	GSM147940	Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
12.4	99.5	GSM182032	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
12.0	99.4	GSM147939	Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
11.8	99.4	GSM182035	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
9.8	99.3	GSM147935	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
7.3	98.9	GSM182037	Laser capture microdissected (LCM) endothelium at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
6.8	98.7	GSM147941	Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
6.6	98.7	GSM147946	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
6.6	98.7	GSM147937	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
6.5	98.7	GSM147947	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
6.3	98.6	GSM147945	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
6.2	98.6	GSM201098	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.2	98.6	GSM201096	Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.0	98.5	GSM182044	Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.8	98.4	GSM201106	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.8	98.4	GSM201099	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.8	98.4	GSM182043	Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.7	98.4	GSM201118	Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.7	98.4	GSM201097	Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
5.6	98.3	GSM182039	Laser capture microdissected (LCM) epidermis at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.6	98.3	GSM191089	Soybean_Cotyledon_OI1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
5.5	98.3	GSM182040	Laser capture microdissected (LCM) epidermis at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.2	98.1	GSM147951	Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
5.2	98.1	GSM182029	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.1	98.1	GSM147949	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
5.0	98.0	GSM182036	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
5.0	98.0	GSM201104	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.9	98.0	GSM201103	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.8	97.9	GSM147952	Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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