Co-expression analysis

Gene ID GmaAffx.87908.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g53120: SPDS3 (SPERMIDINE SYNTHASE 3) (HF=2e-23)
Module size 19 genes
NF 0.47
%ile 77.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6080.70.95GmaAffx.87908.1.S1_atBM270150--2e-23At5g53120SPDS3 (SPERMIDINE SYNTHASE 3)O.I.H.G.S.X.
0.6382.90.97Gma.16750.2.S1_s_atBI700016--3e-10At5g40760G6PD6 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 6)O.I.H.G.S.X.
0.6080.70.96GmaAffx.70005.1.S1_s_atCA936335--3e-10At1g066202-oxoglutarate-dependent dioxygenase, putativeO.I.H.G.S.X.
0.5979.50.97Gma.10216.1.S1_a_atBI969369--3e-8At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.5678.20.96GmaAffx.75948.1.S1_atBF424136--6e-15At1g08470strictosidine synthase family proteinO.I.H.G.S.X.
0.5678.20.97Gma.2439.1.S1_atBI972053--1e-7At4g02860catalyticO.I.H.G.S.X.
0.5678.20.97Gma.16750.1.S1_atBE658232--6e-119At3g27300G6PD5 (glucose-6-phosphate dehydrogenase 5)O.I.H.G.S.X.
0.5374.20.97GmaAffx.90759.1.S1_atCF806484--6e-2At2g27510ATFD3 (ferredoxin 3)O.I.H.G.S.X.
0.5071.70.98Gma.2679.1.S1_s_atBI945807--2e+0At4g00070-O.I.H.G.S.X.
0.4766.60.97GmaAffx.89867.1.A1_s_atCK606556--4e-3At4g02850phenazine biosynthesis PhzC/PhzF family proteinO.I.H.G.S.X.
0.4563.90.97Gma.10216.2.S1_atBM085697--1e+0At1g31760SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.4057.10.97GmaAffx.91723.1.S1_atCF805997--3e-86At3g27300G6PD5 (glucose-6-phosphate dehydrogenase 5)O.I.H.G.S.X.
0.3954.50.97GmaAffx.91826.1.S1_s_atCF808285--4e-53At1g65930isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putativeO.I.H.G.S.X.
0.3954.50.97Gma.7690.2.S1_s_atBE803165alanine aminotransferase 1-2e-81At1g72330ALAAT2 (ALANINE AMINOTRANSFERASE 2)O.I.H.G.S.X.
0.3853.30.97GmaAffx.88320.1.S1_atCA801881--5e+0At5g0949040S ribosomal protein S15 (RPS15B)O.I.H.G.S.X.
0.3853.30.97Gma.8284.1.A1_atAW396770--9e-2At3g59845NADP-dependent oxidoreductase, putativeO.I.H.G.S.X.
0.3751.70.97Gma.16555.1.S1_atBU544497--2e-27At4g32180ATPANK2 (PANTOTHENATE KINASE 2)O.I.H.G.S.X.
0.3650.80.96GmaAffx.92897.1.S1_s_atCF808622--5e-31At3g23490CYN (CYANASE)O.I.H.G.S.X.
0.2329.90.97Gma.16706.1.S1_s_atBU551340--6e-20At3g60100CSY5 (citrate synthase 5)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage