Co-expression analysis

Gene ID	GmaAffx.87526.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g63470: NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4) (HF=6e+0)
Module size	7 genes
NF	0.49
%ile	79.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	86.1	0.96	GmaAffx.87526.1.S1_at	BM954581	-	-	6e+0	At5g63470	NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.96	GmaAffx.59154.1.S1_at	BG508624	-	-	7e+0	At4g37685	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.97	GmaAffx.91355.1.S1_s_at	CF807080	alternative oxidase 2b	-	7e-5	At5g64210	AOX2	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.98	GmaAffx.86361.1.S1_s_at	BG508205	alternative oxidase 2b	-	4e-9	At3g27620	AOX1C	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.98	Gma.11120.1.S1_at	U87907.1	alternative oxidase 2b	-	3e-6	At3g22370	AOX1A (ALTERNATIVE OXIDASE 1A)	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.96	GmaAffx.78968.2.S1_at	BM188587	-	-	9e-13	At5g39670	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.96	GmaAffx.91573.1.S1_at	CF807298	-	-	5e-9	At3g05200	ATL6	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	96.8	GSM209598	resistant_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.45481.1.S1_s_at, orthologous to the query gene, GmaAffx.87526.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	97.4	PtpAffx.45481.1.S1_s_at	At5g63470	hypothetical protein	-	2e-2	At5g67040	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.211416.1.S1_at	At5g63470	AP2 domain-containing transcription factor	-	5e-71	At4g37750	ANT (AINTEGUMENTA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.110115.1.A1_at	At5g63470	hypothetical protein	-	2e+0	At2g26240	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	PtpAffx.20634.4.S1_at	At5g63470	-	-	5e-3	At2g41420	proline-rich family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.212832.1.S1_s_at	At5g63470	hypothetical protein	-	3e-13	At3g48430	REF6 (RELATIVE OF EARLY FLOWERING 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.30207.1.S1_s_at	At5g63470	hypothetical protein	-	2e-61	At3g11730	ATFP8	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.163957.1.S1_s_at	At5g63470	hypothetical protein	-	1e-10	At1g06130	GLX2-4 (glyoxalase 2-4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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