Co-expression analysis

Gene ID GmaAffx.86901.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g55090: ATPase, coupled to transmembrane movement of substances (HF=1e-3)
Module size 6 genes
NF 0.07
%ile 23.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.82GmaAffx.86901.1.S1_atBI942268--1e-3At3g55090ATPase, coupled to transmembrane movement of substancesO.I.H.G.S.X.
0.2126.60.96Gma.3780.1.S1_atBG237497--3e-1At1g55000peptidoglycan-binding LysM domain-containing proteinO.I.H.G.S.X.
0.1013.00.97GmaAffx.12366.1.S1_atBE823890--3e+0At5g45890SAG12 (SENESCENCE-ASSOCIATED GENE 12)O.I.H.G.S.X.
0.1013.00.97Gma.4125.1.S1_atBM567768--9e-37At3g58580hydrolaseO.I.H.G.S.X.
0.047.00.95Gma.1523.1.S1_atAW705055--3e-5At1g12970leucine-rich repeat family proteinO.I.H.G.S.X.
0.024.50.97Gma.16533.1.S1_atBM308636--1e-6At4g18400unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.496.4GSM209584susceptible_6hours_rep2GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
3.195.8GSM191087Soybean_Cotyledon_II1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
3.195.8GSM209583resistant_6hours_rep2GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
3.195.8GSM191088Soybean_Cotyledon_II2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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