Co-expression analysis

Gene ID	GmaAffx.86773.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g10340: PAL4 (Phenylalanine ammonia-lyase 4) (HF=4e-9)
Module size	8 genes
NF	0.41
%ile	71.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	89.2	0.94	GmaAffx.86773.2.S1_at	BG839283	-	-	4e-9	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.96	GmaAffx.90764.1.S1_s_at	CF805757	-	-	8e-42	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.96	GmaAffx.90764.1.S1_at	CF805757	-	-	8e-42	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.97	Gma.4269.3.S1_a_at	CA784404	-	-	3e-19	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	Gma.4269.2.S1_a_at	BU083811	-	-	8e-17	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	GmaAffx.92300.1.S1_s_at	CF807658	Chorismate synthase	-	5e-50	At1g48850	EMB1144 (embryo defective 1144)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.96	GmaAffx.86773.1.S1_s_at	BQ576578	-	-	2e-12	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please select
0.20	25.1	0.96	GmaAffx.92278.1.S1_s_at	CF808003	6-phosphogluconate dehydrogenase	-	4e-74	At3g02360	6-phosphogluconate dehydrogenase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	96.6	GSM244916	4_SLO.I3U1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance

Inter-species module comparison

A co-expression module including the maize gene, Zm.15903.1.S1_at, orthologous to the query gene, GmaAffx.86773.2.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	88.6	Zm.15903.1.S1_at	At3g10340	phenylalanine ammonia-lyase	-	2e-14	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please select
0.67	85.8	Zm.10401.1.S1_at	At3g10340	glyoxylate reductase	-	3e-12	At1g79870	oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	Zm.9804.1.A1_at	At3g10340	-	-	4e+0	At3g22230	60S ribosomal protein L27 (RPL27B)	O.I.	H.G.	S.X.	Please select
0.55	71.6	ZmAffx.1051.1.A1_at	At3g10340	-	-	2e-1	At3g01790	ribosomal protein L13 family protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	Zm.8772.1.A1_at	At3g10340	hypothetical protein LOC100192757	-	2e-38	At5g54080	HGO (HOMOGENTISATE 1,2-DIOXYGENASE)	O.I.	H.G.	S.X.	Please select
0.43	52.8	Zm.386.1.S1_at	At3g10340	tassel seed2	-	4e-2	At3g13850	LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22)	O.I.	H.G.	S.X.	Please select
0.42	51.3	ZmAffx.549.1.S1_at	At3g10340	-	-	3e+0	At1g22067	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.12546.1.S1_a_at	At3g10340	-	-	2e+0	At3g43440	JAZ11 (JASMONATE-ZIM-DOMAIN PROTEIN 11)	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.3851.3.A1_a_at	At3g10340	-	-	5e+0	At1g20340	DRT112	O.I.	H.G.	S.X.	Please select
0.26	22.7	ZmAffx.1305.1.S1_s_at	At3g10340	-	-	0	Atcg01250	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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