Co-expression analysis

Gene ID	GmaAffx.86773.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g10340: PAL4 (Phenylalanine ammonia-lyase 4) (HF=4e-9)
Module size	8 genes
NF	0.41
%ile	71.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	89.2	0.94	GmaAffx.86773.2.S1_at	BG839283	-	-	4e-9	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.96	GmaAffx.90764.1.S1_s_at	CF805757	-	-	8e-42	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.96	GmaAffx.90764.1.S1_at	CF805757	-	-	8e-42	At2g45300	3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.97	Gma.4269.3.S1_a_at	CA784404	-	-	3e-19	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	Gma.4269.2.S1_a_at	BU083811	-	-	8e-17	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	GmaAffx.92300.1.S1_s_at	CF807658	Chorismate synthase	-	5e-50	At1g48850	EMB1144 (embryo defective 1144)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.96	GmaAffx.86773.1.S1_s_at	BQ576578	-	-	2e-12	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please select
0.20	25.1	0.96	GmaAffx.92278.1.S1_s_at	CF808003	6-phosphogluconate dehydrogenase	-	4e-74	At3g02360	6-phosphogluconate dehydrogenase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	96.6	GSM244916	4_SLO.I3U1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.128701.1.S1_s_at, orthologous to the query gene, GmaAffx.86773.2.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	PtpAffx.128701.1.S1_s_at	At3g10340	phenylalanine amonnia lyase	-	4e-19	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	PtpAffx.223878.1.S1_at	At3g10340	hypothetical protein	-	1e+0	At2g23960	defense-related protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.163752.1.S1_s_at	At3g10340	hypothetical protein	-	3e-63	At5g47880	ERF1-1 (EUKARYOTIC RELEASE FACTOR 1-1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.152294.1.S1_at	At3g10340	-	-	5e-1	At3g59440	calcium-binding protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	PtpAffx.122535.1.S1_at	At3g10340	-	-	7e-5	At1g52760	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	PtpAffx.209733.1.S1_s_at	At3g10340	NBS resistance protein	-	6e-1	At1g29970	RPL18AA (60S RIBOSOMAL PROTEIN L18A-1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.59	84.9	PtpAffx.161399.1.S1_at	At3g10340	hypothetical protein	-	6e-15	At1g74030	enolase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	Ptp.3032.1.S1_s_at	At3g10340	hypothetical protein	-	6e-3	At5g07850	transferase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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