CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID GmaAffx.86773.2.S1_at

Gene name
Homology with Arabidopsis Similar to At3g10340: PAL4 (Phenylalanine ammonia-lyase 4) (HF=4e-9)

Module size 8 genes

NF 0.41

%ile 71.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.74 89.2 0.94 GmaAffx.86773.2.S1_at BG839283 - - 4e-9 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) O.I. H.G. S.X.
0.48 67.7 0.96 GmaAffx.90764.1.S1_s_at CF805757 - - 8e-42 At2g45300 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase O.I. H.G. S.X.
0.44 63.3 0.96 GmaAffx.90764.1.S1_at CF805757 - - 8e-42 At2g45300 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase O.I. H.G. S.X.
0.42 59.3 0.97 Gma.4269.3.S1_a_at CA784404 - - 3e-19 At1g27450 APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) O.I. H.G. S.X.
0.40 57.1 0.98 Gma.4269.2.S1_a_at BU083811 - - 8e-17 At1g27450 APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) O.I. H.G. S.X.
0.40 57.1 0.98 GmaAffx.92300.1.S1_s_at CF807658 Chorismate synthase - 5e-50 At1g48850 EMB1144 (embryo defective 1144) O.I. H.G. S.X.
0.33 46.1 0.96 GmaAffx.86773.1.S1_s_at BQ576578 - - 2e-12 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) O.I. H.G. S.X.
0.20 25.1 0.96 GmaAffx.92278.1.S1_s_at CF808003 6-phosphogluconate dehydrogenase - 4e-74 At3g02360 6-phosphogluconate dehydrogenase family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.5 96.6 GSM244916 4_SLO.I3U1.CEL, Experimental replicate 1 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance

Inter-species module comparison

A co-expression module including the rice gene, Os04g0518400, orthologous to the query gene, GmaAffx.86773.2.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 Os04g0518400 At3g10340 - Phenylalanine ammonia-lyase 2 (EC 4.3.1.5) 4e-22 At3g10340 PAL4 (Phenylalanine ammonia-lyase 4) O.I. H.G. S.X.
0.67 87.2 Os02g0697400 At3g10340 - 4-coumarate--CoA ligase 2 (EC 6.2.1.12) (4CL 2)(4-coumaroyl-CoA synthase 2) 8e-5 At1g65060 4CL3 O.I. H.G. S.X.
0.67 87.2 Os10g0320100 At3g10340 - Flavonoid 3'-monooxygenase (EC 1.14.13.21)(Flavonoid 3'-hydroxylase) (Cytochrome P450 75B2) 6e-2 At5g07990 TT7 (TRANSPARENT TESTA 7) O.I. H.G. S.X.
0.67 87.2 Os06g0102100 At3g10340 - Cytochrome P450 family protein 1e+0 At5g46020 unknown protein O.I. H.G. S.X.
0.67 87.2 Os07g0510500 At3g10340 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 4e-3 At3g21800 UGT71B8 (UDP-GLUCOSYL TRANSFERASE 71B8) O.I. H.G. S.X.
0.50 68.0 Os12g0115700 At3g10340 - Chalcone-flavanone isomerase family protein 3e+0 At4g04745 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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