Co-expression analysis

Gene ID GmaAffx.86773.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g10340: PAL4 (Phenylalanine ammonia-lyase 4) (HF=4e-9)
Module size 8 genes
NF 0.41
%ile 71.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7489.20.94GmaAffx.86773.2.S1_atBG839283--4e-9At3g10340PAL4 (Phenylalanine ammonia-lyase 4)O.I.H.G.S.X.
0.4867.70.96GmaAffx.90764.1.S1_s_atCF805757--8e-42At2g453003-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthaseO.I.H.G.S.X.
0.4463.30.96GmaAffx.90764.1.S1_atCF805757--8e-42At2g453003-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthaseO.I.H.G.S.X.
0.4259.30.97Gma.4269.3.S1_a_atCA784404--3e-19At1g27450APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)O.I.H.G.S.X.
0.4057.10.98Gma.4269.2.S1_a_atBU083811--8e-17At1g27450APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)O.I.H.G.S.X.
0.4057.10.98GmaAffx.92300.1.S1_s_atCF807658Chorismate synthase-5e-50At1g48850EMB1144 (embryo defective 1144)O.I.H.G.S.X.
0.3346.10.96GmaAffx.86773.1.S1_s_atBQ576578--2e-12At3g10340PAL4 (Phenylalanine ammonia-lyase 4)O.I.H.G.S.X.
0.2025.10.96GmaAffx.92278.1.S1_s_atCF8080036-phosphogluconate dehydrogenase-4e-74At3g023606-phosphogluconate dehydrogenase family proteinO.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.596.6GSM2449164_SLO.I3U1.CEL, Experimental replicate 1GSE9687Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistanceLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g10340, orthologous to the query gene, GmaAffx.86773.2.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.4355.3At3g10340820196PAL4 (Phenylalanine ammonia-lyase 4)F:ammonia-lyase activity, ammonia ligase activity, catalytic activity;P:L-phenylalanine catabolic process, biosynthetic process;C:cytoplasm;BPOFMAO.I.H.G.S.X.
0.6882.2At2g38080818386IRX12 (IRREGULAR XYLEM 12)Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype.O.I.H.G.S.X.
0.6781.6At1g08340837354rac GTPase activating protein, putativeF:Rac GTPase activator activity;P:signal transduction;C:intracellular;MOFPVBAO.I.H.G.S.X.
0.6579.6At5g54690835558GAUT12 (GALACTURONOSYLTRANSFERASE 12)Encodes a protein with putative galacturonosyltransferase activity. Mutants defective in this gene displayed a notable reduction in xylose (>50%) in the cell walls from stems and roots and a reduction in cellulose (~25%).O.I.H.G.S.X.
0.6579.6At5g44030834426CESA4 (CELLULOSE SYNTHASE A4)Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.O.I.H.G.S.X.
0.6378.1At5g67210836856unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.H.G.S.X.
0.6277.3At4g18780827612IRX1 (IRREGULAR XYLEM 1)Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance. Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.O.I.H.G.S.X.
0.6176.7At3g62020825375GLP10 (GERMIN-LIKE PROTEIN 10)germin-like protein (GLP10)O.I.H.G.S.X.
0.6176.7At4g27435828852unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.6176.7At5g03170831914FLA11F:unknown;P:unknown;C:anchored to membrane;PBOMAFO.I.H.G.S.X.
0.6176.7At5g15630831417IRX6Encodes a member of the COBRA family, similar to phytochelatin synthetase. Involved in secondary cell wall biosynthesis. Mutants make smaller plants with reduced levels of cellulose and cell wall sugars.O.I.H.G.S.X.
0.6075.7At2g03200814849aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFMOO.I.H.G.S.X.
0.5974.7At5g17420831608IRX3 (IRREGULAR XYLEM 3)Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181).O.I.H.G.S.X.
0.5974.7At1g27380839627RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2)encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined.O.I.H.G.S.X.
0.5873.8At2g41610818759unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.5873.8At1g79180844259MYB63 (MYB DOMAIN PROTEIN 63)Member of the R2R3 factor gene family.O.I.H.G.S.X.
0.5469.5At1g09610837488unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBO.I.H.G.S.X.
0.4050.8At1g72230843555plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;POBO.I.H.G.S.X.
0.3338.1At1g73640843698AtRABA6a (Arabidopsis Rab GTPase homolog A6a)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVAO.I.H.G.S.X.

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