Co-expression analysis

Gene ID	GmaAffx.86503.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g13890: unknown protein (HF=3e+0)
Module size	6 genes
NF	0.32
%ile	59.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.97	GmaAffx.86503.1.S1_at	BG157670	-	-	3e+0	At5g13890	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.98	GmaAffx.86724.1.S1_at	BI468815	-	-	1e-33	At3g03570	-	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.98	GmaAffx.40419.1.S1_at	BF325410	-	-	1e-11	At3g03570	-	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.98	GmaAffx.76624.1.S1_at	CA939046	-	-	6e-10	At4g31580	SRZ-22	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.98	GmaAffx.81052.2.S1_at	BM528722	-	-	6e-39	At3g58500	PP2A-3 (PROTEIN PHOSPHATASE 2A-3)	O.I.	H.G.	S.X.	Please select
0.13	16.3	0.98	Gma.12030.3.S1_a_at	BG359479	-	-	4e+0	At3g47341	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.58549.1.S1_at, orthologous to the query gene, GmaAffx.86503.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	TaAffx.58549.1.S1_at	At5g13890	-	-	2e-2	At4g05070	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	TaAffx.34241.2.S1_at	At5g13890	-	-	4e+0	At5g51960	-	O.I.	H.G.	S.X.	Please select
0.17	19.8	TaAffx.113814.1.S1_at	At5g13890	-	-	1e+0	At4g10955	lipase class 3 family protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	TaAffx.25126.1.S1_at	At5g13890	-	-	3e+0	At3g17460	PHD finger family protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	TaAffx.80013.1.S1_at	At5g13890	-	-	1e+0	At4g18335	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	TaAffx.30673.1.S1_at	At5g13890	-	-	7e-11	At4g25630	FIB2 (FIBRILLARIN 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage