Co-expression analysis

Gene ID GmaAffx.86503.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g13890: unknown protein (HF=3e+0)
Module size 6 genes
NF 0.32
%ile 59.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.97GmaAffx.86503.1.S1_atBG157670--3e+0At5g13890unknown proteinO.I.H.G.S.X.
0.4259.30.98GmaAffx.86724.1.S1_atBI468815--1e-33At3g03570-O.I.H.G.S.X.
0.3650.80.98GmaAffx.40419.1.S1_atBF325410--1e-11At3g03570-O.I.H.G.S.X.
0.2939.00.98GmaAffx.76624.1.S1_atCA939046--6e-10At4g31580SRZ-22O.I.H.G.S.X.
0.1923.70.98GmaAffx.81052.2.S1_atBM528722--6e-39At3g58500PP2A-3 (PROTEIN PHOSPHATASE 2A-3)O.I.H.G.S.X.
0.1316.30.98Gma.12030.3.S1_a_atBG359479--4e+0At3g47341unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g13890, orthologous to the query gene, GmaAffx.86503.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.8491.9At5g13890831236unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.5974.7At5g35160833470-F:unknown;P:unknown;C:integral to membrane, Golgi apparatus;MPOFO.I.H.G.S.X.
0.5166.3At5g41950834200bindingF:binding;P:biological_process unknown;C:cellular_component unknown;OMBFPAVO.I.H.G.S.X.
0.4963.5At3g26370822241unknown proteinF:unknown;P:unknown;C:Golgi apparatus;PO.I.H.G.S.X.
0.4862.5At1g05520837054transport protein, putativeF:protein binding, transporter activity, zinc ion binding;P:transport, response to salt stress;C:COPII vesicle coat;MFOPO.I.H.G.S.X.
0.4862.5At3g51050824269FG-GAP repeat-containing proteinF:molecular_function unknown;P:cell-matrix adhesion;C:integrin complex, integral to membrane, plasma membrane;OPMO.I.H.G.S.X.
0.4659.8At4g01810828105protein transport protein-relatedF:protein binding, zinc ion binding;P:intracellular protein transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;PMOFBVAO.I.H.G.S.X.
0.4558.3At4g38500830007unknown proteinF:unknown;P:unknown;C:Golgi apparatus;POBAO.I.H.G.S.X.
0.4558.3At5g06660830554unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOPO.I.H.G.S.X.
0.4558.3At2g30710817622RabGAP/TBC domain-containing proteinF:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFPO.I.H.G.S.X.
0.4457.2At5g65950836725unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.4355.3At1g14670838029endomembrane protein 70, putativeF:unknown;P:transport;C:integral to membrane, Golgi apparatus, membrane;MPOFO.I.H.G.S.X.
0.4253.9At5g13390831180NEF1 (NO EXINE FORMATION 1)Required for normal pollen development and lipid accumulation within the tapetumO.I.H.G.S.X.
0.4253.9At4g24840828587-F:molecular_function unknown;P:protein transport, Golgi organization;C:vacuole;MFOPO.I.H.G.S.X.
0.4152.4At4g12650826878-F:unknown;P:unknown;C:integral to membrane, Golgi apparatus, plasma membrane, vacuole;MPOFO.I.H.G.S.X.
0.4152.4At4g34450829596coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putativeF:protein binding, clathrin binding, structural molecule activity, binding;P:intracellular protein transport, vesicle-mediated transport;C:chloroplast, membrane;MFOPBO.I.H.G.S.X.
0.4152.4At5g35730833549EXS family protein / ERD1/XPR1/SYG1 family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFPOO.I.H.G.S.X.
0.3948.4At2g21390816678coatomer protein complex, subunit alpha, putativeF:protein binding, structural molecule activity, transporter activity;P:intracellular protein transport, vesicle-mediated transport, ER to Golgi vesicle-mediated transport;C:COPI vesicle coat, CUL4 RING ubiquitin ligase complex, membrane;MFOBPAO.I.H.G.S.X.
0.3948.4At5g63840836504RSW3 (RADIAL SWELLING 3)radial swelling mutant shown to be specifically impaired in cellulose production. Encodes the alpha-subunit of a glucosidase II enzyme.O.I.H.G.S.X.
0.3948.4At3g28720822504unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFPO.I.H.G.S.X.
0.3948.4At3g56110824777PRA1.B1 (PRENYLATED RAB ACCEPTOR 1.B1)F:molecular_function unknown;P:vesicle-mediated transport;C:endoplasmic reticulum;PMFOO.I.H.G.S.X.
0.3846.7At1g68100843138IAR1 (IAA-ALANINE RESISTANT 1)member of IAA-alanine resistance protein 1O.I.H.G.S.X.
0.3846.7At3g03570821234-F:molecular_function unknown;P:biological_process unknown;C:cytosol;MPOO.I.H.G.S.X.
0.3846.7At5g15880831445unknown proteinF:molecular_function unknown;P:unknown;C:cellular_component unknown;MOBFPAVO.I.H.G.S.X.
0.3846.7At5g61970836318signal recognition particle-related / SRP-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBAO.I.H.G.S.X.
0.3745.0At3g63150825490MIRO2 (MIRO-RELATED GTP-ASE 2)Encodes a calcium binding GTPases that is localized to the mitochondrion and is involved in salt stress response.O.I.H.G.S.X.
0.3745.0At5g11040830971-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.3745.0At2g34250817986protein transport protein sec61, putativeF:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:response to salt stress, protein secretion;C:membrane;BOMAFPO.I.H.G.S.X.
0.3643.6At2g30110817562ATUBA1Encodes a ubiquitin-activating enzyme (E1), involved in the first step in conjugating multiple ubiquitins to proteins targeted for degradation. Gene is expressed in most tissues examined. Mutant is able to revert the constitutive defense responses phenotype of snc1, which indicates the gene is involved in defense response. It also indicates that ubiquitination plays a role in plant defense signalling.O.I.H.G.S.X.
0.3643.6At2g01970814728endomembrane protein 70, putativeF:unknown;P:transport;C:integral to membrane, Golgi apparatus, plasma membrane, plant-type cell wall;MPOFO.I.H.G.S.X.
0.3643.6At4g23640828464TRH1 (TINY ROOT HAIR 1)Functions as a potassium transporter and is required for the establishment of root tip growth.O.I.H.G.S.X.
0.3643.6At5g36290833627unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;BMOPFAO.I.H.G.S.X.
0.3643.6At4g24330828536unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MFOPBO.I.H.G.S.X.
0.3439.8At5g11640831036-F:unknown;P:unknown;C:unknown;MPOO.I.H.G.S.X.
0.3439.8At4g21150827863HAP6 (HAPLESS 6)F:dolichyl-diphosphooligosaccharide-protein glycotransferase activity;P:protein amino acid terminal N-glycosylation, response to cold;C:in 6 components;MFPOO.I.H.G.S.X.
0.3338.1At5g19690832089STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A)encodes an oligosaccharyl transferase involved response to high salt. Mutants are hypersensitive to high salt conditionsO.I.H.G.S.X.
0.3235.7At5g11490831021adaptin family proteinF:protein transporter activity, protein binding, binding;P:intracellular protein transport, vesicle-mediated transport, protein transport;C:membrane coat, clathrin adaptor complex;MFOPO.I.H.G.S.X.
0.3133.8At3g02420821152unknown proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;POMFO.I.H.G.S.X.
0.3133.8At5g61840836306GUT1F:glucuronoxylan glucuronosyltransferase activity, catalytic activity;P:secondary cell wall biogenesis, glucuronoxylan biosynthetic process;C:Golgi apparatus, membrane;PMOBFO.I.H.G.S.X.
0.3133.8At1g63110842615cell division cycle protein-relatedF:unknown;P:GPI anchor biosynthetic process;C:plasma membrane;MFPOBO.I.H.G.S.X.
0.3032.1At2g29900817540presenilin family proteinF:molecular_function unknown;P:intracellular signaling cascade;C:integral to membrane, membrane;MOPAO.I.H.G.S.X.
0.2930.3At3g52760824442integral membrane Yip1 family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFOPO.I.H.G.S.X.
0.2930.3At5g05520830435outer membrane OMP85 family proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid;BOMFPVO.I.H.G.S.X.
0.2726.2At1g80950844435phospholipid/glycerol acyltransferase family proteinF:acyltransferase activity;P:metabolic process;C:endoplasmic reticulum, nucleus;BOMPFO.I.H.G.S.X.
0.2726.2At5g37510833729EMB1467 (embryo defective 1467)Encodes a subunit of the 400 kDa subcomplex of the mitochondrial NADH dehydrogenase (complex I). The protein has been isolated in the male gametophyte.O.I.H.G.S.X.
0.2624.4At3g50590824223nucleotide bindingF:nucleotide binding;P:biological_process unknown;C:plasma membrane;MBFOPVO.I.H.G.S.X.
0.2624.4At4g38640830020choline transporter-relatedF:unknown;P:unknown;C:unknown;MOFPABO.I.H.G.S.X.
0.2624.4At3g05280819692integral membrane Yip1 family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPO.I.H.G.S.X.
0.2624.4At1g12470837804Pep3/Vps18/deep orange family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MFOPBO.I.H.G.S.X.
0.2624.4At3g25800822171PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)one of three genes encoding the protein phosphatase 2A regulatory subunitO.I.H.G.S.X.
0.2624.4At5g35430833507bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MPOBFO.I.H.G.S.X.
0.2624.4At5g55500835643XYLT (ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE)Encodes a beta-1,2-xylosyltransferase that is glycosylated at two positions.O.I.H.G.S.X.
0.2624.4At5g18520831970-F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOFBO.I.H.G.S.X.
0.2522.6At3g01150821129PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.O.I.H.G.S.X.
0.2420.7At5g02850831762hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBO.I.H.G.S.X.
0.2319.3At5g54750835565transport protein particle (TRAPP) component Bet3, putativeF:molecular_function unknown;P:ER to Golgi vesicle-mediated transport;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.2217.5At1g20050838593HYD1 (HYDRA1)C-8 sterol isomeraseO.I.H.G.S.X.
0.1912.7At3g62120825385tRNA synthetase class II (G, H, P and S) family proteinF:proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:prolyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:membrane;BOMAFPO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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