Co-expression analysis

Gene ID	GmaAffx.85304.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g38290: peptidyl-tRNA hydrolase family protein (HF=5e+0)
Module size	22 genes
NF	0.58
%ile	88.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.9	0.94	GmaAffx.85304.1.S1_at	BG155103	-	-	5e+0	At5g38290	peptidyl-tRNA hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.73	88.9	0.95	Gma.13099.1.S1_at	CD417080	-	-	8e-12	At1g05190	emb2394 (embryo defective 2394)	O.I.	H.G.	S.X.	Please select
0.72	88.1	0.95	Gma.3588.1.S1_at	CD408984	-	-	2e-52	At3g13120	30S ribosomal protein S10, chloroplast, putative	O.I.	H.G.	S.X.	Please select
0.72	88.1	0.95	Gma.7200.1.S1_at	CD409833	-	-	6e-32	At1g17650	GLYR2 (GLYOXYLATE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.69	86.8	0.95	Gma.13001.2.S1_a_at	BU578274	-	-	5e-12	At4g17560	ribosomal protein L19 family protein	O.I.	H.G.	S.X.	Please select
0.68	86.4	0.95	Gma.7012.1.S1_a_at	CD392604	-	-	7e-3	At3g29070	protein transmembrane transporter	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.95	Gma.10122.1.A1_at	CD405211	-	-	3e-8	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.94	Gma.8261.1.A1_s_at	AW348445	-	-	1e-1	At5g14910	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.95	Gma.7148.1.A1_at	CD393367	-	-	9e-17	At5g57170	macrophage migration inhibitory factor family protein / MIF family protein	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.95	Gma.1963.1.S1_s_at	BG041460	-	-	8e-23	At1g50900	-	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.96	Gma.5413.3.S1_a_at	BU926967	-	-	1e-9	At2g24090	ribosomal protein L35 family protein	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.96	Gma.10595.1.S1_at	CD414051	-	-	2e-40	At1g64510	ribosomal protein S6 family protein	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.97	Gma.7972.1.S1_at	CD399265	-	-	2e+0	At4g24310	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.1	0.95	GmaAffx.91630.1.S1_s_at	CF807355	-	-	4e-1	At1g32990	PRPL11 (PLASTID RIBOSOMAL PROTEIN L11)	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.96	Gma.10730.1.S1_at	CD404447	-	-	1e-16	At1g68590	plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.95	GmaAffx.92241.1.S1_s_at	CF807966	-	-	3e-16	At1g11860	aminomethyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.95	Gma.5851.3.S1_at	CD397657	-	-	1e-11	At1g74970	RPS9 (RIBOSOMAL PROTEIN S9)	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.94	Gma.7100.1.A1_at	CD400991	-	-	1e-6	At4g14890	ferredoxin family protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.94	GmaAffx.64090.1.S1_at	AW203536	-	-	2e-20	At4g29060	emb2726 (embryo defective 2726)	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.96	Gma.11178.1.S1_at	CD395248	-	-	1e-7	At1g29070	ribosomal protein L34 family protein	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.95	Gma.1389.1.S1_at	CD407055	-	-	4e-48	At1g78630	emb1473 (embryo defective 1473)	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.95	Gma.1355.1.S1_at	BU545782	-	-	1e-4	At3g54210	ribosomal protein L17 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.3	99.3	GSM238048	Soybean-Mandarin-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
10.3	99.3	GSM245938	Leaf_LCO treated_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
9.7	99.3	GSM238061	Soybean-S03W4-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.2	99.2	GSM209581	susceptible_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
9.2	99.2	GSM238049	Soybean-Mandarin-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
9.2	99.2	GSM245937	Leaf_LCO treated_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
9.1	99.2	GSM209580	resistant_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
9.0	99.2	GSM238050	Soybean-Mandarin-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.8	99.1	GSM238052	Soybean-PS46R-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.7	99.1	GSM238043	Soybean-Bayfield-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.7	99.1	GSM238051	Soybean-Mandarin-7-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.5	99.1	GSM238041	Soybean-Bayfield-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.5	99.1	GSM245935	Leaf_Water Control_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
8.5	99.1	GSM238039	Soybean-Bayfield-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.3	99.1	GSM238031	Soybean-2601R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.2	99.0	GSM209589	resistant_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
8.2	99.0	GSM238060	Soybean-S03W4-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.1	99.0	GSM238036	Soybean-Bayfield-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.0	99.0	GSM245936	Leaf_LCO treated_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
7.9	99.0	GSM237070	Soy_non-shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
7.9	99.0	GSM238038	Soybean-Bayfield-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.9	99.0	GSM238053	Soybean-PS46R-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.9	99.0	GSM209590	susceptible_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
7.8	99.0	GSM238047	Soybean-Mandarin-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.7	99.0	GSM238033	Soybean-2601R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.5	98.9	GSM238034	Soybean-2601R-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.4	98.9	GSM238054	Soybean-PS46R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.3	98.9	GSM209582	mock_0hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
7.2	98.9	GSM238055	Soybean-PS46R-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.1	98.8	GSM238056	Soybean-PS46R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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