Co-expression analysis

Gene ID	GmaAffx.84873.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g49680: BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3) (HF=3e-11)
Module size	30 genes
NF	0.44
%ile	74.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.8	0.87	GmaAffx.84873.1.S1_at	AW472165	-	-	3e-11	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	O.I.	H.G.	S.X.	Please select
0.69	86.8	0.91	Gma.3702.1.S1_at	BU578108	-	-	6e-7	At3g54420	ATEP3	O.I.	H.G.	S.X.	Please select
0.68	86.4	0.90	GmaAffx.89972.1.S1_s_at	CF805697	-	-	6e-5	At2g43590	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.64	83.4	0.91	GmaAffx.90538.1.A1_s_at	CF806263	-	-	8e-2	At2g24810	pathogenesis-related thaumatin family protein	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.91	GmaAffx.494.1.S1_at	AI938330	-	-	1e+0	At5g41420	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.92	GmaAffx.42847.1.S1_s_at	BU578388	-	-	5e-12	At2g14580	ATPRB1	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.93	GmaAffx.46214.4.S1_at	AI460836	-	-	4e+0	At5g35405	-	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.94	GmaAffx.69694.1.S1_at	BQ785570	-	-	3e+0	At3g26980	MUB4 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 4 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.95	GmaAffx.18924.1.S1_at	BU546215	-	-	1e-5	At2g18950	HPT1 (HOMOGENTISATE PHYTYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.92	GmaAffx.31985.1.S1_at	BI320384	-	-	3e+0	At3g20557	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.92	GmaAffx.41414.1.S1_s_at	BU766008	-	-	3e+0	At5g65940	CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.90	GmaAffx.86650.1.S1_at	BI321218	-	-	2e-8	At2g43590	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.91	GmaAffx.74923.1.S1_at	BU965066	-	-	3e-3	At2g31560	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.95	GmaAffx.78456.1.S1_at	BQ081108	-	-	4e-6	At2g46750	FAD-binding domain-containing protein	O.I.	H.G.	S.X.	Please select
0.45	63.9	0.94	Gma.7559.1.S1_s_at	BG509205	-	-	1e-3	At2g41680	NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.91	GmaAffx.36484.1.S1_s_at	BI425441	-	-	3e-5	At2g14580	ATPRB1	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.92	GmaAffx.18769.1.S1_at	BI972364	-	-	3e+0	At2g24285	-	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.95	GmaAffx.74033.1.S1_s_at	BM093124	-	-	2e-11	At1g79750	ATNADP-ME4 (NADP-malic enzyme 4)	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.93	GmaAffx.92921.1.S1_at	CF807404	-	-	4e-1	At2g31790	UDP-glucoronosyl/UDP-glucosyl transferase family protein	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.92	GmaAffx.46129.1.S1_at	BI892562	-	-	5e-6	At5g40780	LHT1	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.92	GmaAffx.36707.1.S1_at	BI893867	-	-	1e-19	At2g19900	ATNADP-ME1 (NADP-malic enzyme 1)	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.95	GmaAffx.55244.2.S1_at	BI893826	-	-	1e-3	At5g49700	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.93	Gma.2821.1.S1_at	AI461152	GmOLPa mRNA for PR-5 protein	-	5e-1	At4g24180	-	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.93	Gma.16709.2.S1_s_at	BU579309	-	-	6e-3	At5g36220	CYP81D1 (CYTOCHROME P450 81D1)	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.91	GmaAffx.65422.1.S1_x_at	BM107696	-	-	3e-2	At1g76010	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.93	GmaAffx.68813.1.S1_at	BG042067	-	-	1e-1	At1g60670	-	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.93	Gma.7631.1.A1_at	AW309495	-	-	4e-13	At5g11670	ATNADP-ME2 (NADP-malic enzyme 2)	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.92	GmaAffx.65422.1.S1_at	BM107696	-	-	3e-2	At1g76010	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.92	Gma.16778.1.S1_at	CD403577	-	-	5e+0	At2g17960	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.92	GmaAffx.93314.1.S1_s_at	CF809039	-	-	1e-3	At5g49040	disease resistance-responsive protein-related / dirigent protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	97.2	GSM293756	88_2113.2C.R285L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM293015	20_1089.1N.R055L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM293248	35_1155.1P.R097L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM294272	26_2427.2I.R297L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM293080	7_C033.1N.R9N3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM293553	67_3017.2A.R9A3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM294151	16_3139.2H.R9H3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM293294	77_C067.1P.R9P3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM293408	90_C079.1Q.R9Q2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM293546	60_2021.2A.R275L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM293226	15_C065.1P.R9P2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM292405	9_C101.1F.R9F2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM292845	24_1445.1L.R272L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM293577	9_3009.2A.R9A2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM294169	32_3137.2H.R9H2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM294303	54_3153.2I.R9I2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM294266	22_2417.2I.R236L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM292791	51_1403.1K.R250L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM293740	73_2127.2C.R132L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293887	38_2229.2E.R022L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293662	87_3029.2B.R9B2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293938	84_3083.2E.R9E2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293478	64_1595.1R.R009L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM294033	83_3105.2F.R9F3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM292730	75_C165.1J.R9J1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM294238	87_2337.2H.R240L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM294098	55_2291.2G.R251L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM294112	68_3117.2G.R9G2L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM293763	9_3039.2C.R9C1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM294047	96_3095.2F.R9F1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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