Co-expression analysis

Gene ID	GmaAffx.84862.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g61240: protein binding (HF=1e-29)
Module size	8 genes
NF	0.33
%ile	60.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.8	0.98	GmaAffx.84862.1.S1_at	AI965964	-	-	1e-29	At5g61240	protein binding	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.99	GmaAffx.93138.1.S1_s_at	CF808863	-	-	2e-27	At2g32080	PUR ALPHA-1	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	GmaAffx.22627.1.S1_at	BG352722	-	-	4e-2	At1g18520	TET11 (TETRASPANIN11)	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	Gma.5244.3.S1_a_at	BM893397	-	-	1e-32	At2g32080	PUR ALPHA-1	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.98	GmaAffx.37006.2.S1_at	AI494839	-	-	2e-11	At4g20410	GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.98	GmaAffx.91636.1.S1_s_at	CF807361	-	-	3e-63	At1g57870	ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42)	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.98	GmaAffx.1729.2.S1_at	BG726769	-	-	2e-42	At4g35410	clathrin adaptor complex small chain family protein	O.I.	H.G.	S.X.	Please select
0.16	19.7	0.98	GmaAffx.90062.1.S1_s_at	CF805787	-	-	1e-108	At1g53750	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os03g0211900, orthologous to the query gene, GmaAffx.84862.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	71.3	Os03g0211900	At5g61240	-	Leucine-rich repeat, typical subtype containingprotein	2e-38	At5g61240	protein binding	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.30	32.7	Os01g0883900	At5g61240	-	Putative methyltransferase DUF248 family protein	2e-12	At5g64030	dehydration-responsive protein-related	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.20	16.5	Os07g0633600	At5g61240	-	Conserved hypothetical protein	2e-8	At4g08810	SUB1	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.19	15.1	Os05g0503000	At5g61240	-	Secretory carrier membrane protein	2e-16	At2g20840	secretory carrier membrane protein (SCAMP) family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.13	8.2	Os04g0606500	At5g61240	-	Conserved hypothetical protein	3e-7	At1g16860	merozoite surface protein-related	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.09	4.9	Os02g0738900	At5g61240	-	Dynamin-like protein 6	4e-26	At1g59610	ADL3 (ARABIDOPSIS DYNAMIN-LIKE 3)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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