Co-expression analysis

Gene ID	GmaAffx.84267.1.S1_at
Gene name	Dof22
Homology with Arabidopsis	Similar to At3g21270: ADOF2 (HF=2e-12)
Module size	18 genes
NF	0.26
%ile	51.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	76.3	0.92	GmaAffx.84267.1.S1_at	BM892803	Dof22	-	2e-12	At3g21270	ADOF2	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.95	Gma.3352.1.S1_at	CA819497	-	-	3e-6	At1g11790	ADT1 (arogenate dehydratase 1)	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.95	Gma.7253.2.S1_at	BU926951	-	-	2e-5	At5g57930	APO2 (ACCUMULATION OF PHOTOSYSTEM ONE 2)	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.95	GmaAffx.82836.2.S1_s_at	CA782741	-	-	3e-4	At2g39190	ATATH8	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.94	GmaAffx.87358.1.S1_at	BM525373	-	-	8e-1	At2g22760	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.94	Gma.3404.1.S1_at	BU577937	-	-	1e-12	At5g14660	PDF1B (PEPTIDE DEFORMYLASE 1B)	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.94	Gma.11299.3.S1_a_at	BG045664	-	-	3e-25	At5g28840	GME (GDP-D-MANNOSE 3',5'-EPIMERASE)	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.95	Gma.3645.1.S1_at	BI317014	-	-	7e-14	At1g64720	CP5	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.95	GmaAffx.84912.2.S1_at	BE021707	-	-	1e+0	At5g16090	-	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.95	Gma.10458.2.S1_at	BM524459	-	-	2e+0	At5g45020	-	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.94	Gma.6857.1.A1_at	BU545513	-	-	1e+0	At1g80570	F-box family protein (FBL14)	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.97	Gma.17723.1.A1_s_at	BU546586	-	-	1e-6	At1g08490	CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE)	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.95	GmaAffx.69612.1.S1_at	AI965738	-	-	1e+0	At3g16070	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	26.6	0.96	Gma.3722.1.S1_at	AW309441	-	-	8e-6	At1g56200	emb1303 (embryo defective 1303)	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.94	GmaAffx.82996.1.S1_at	BM954173	-	-	9e-32	At5g15450	CLPB3 (CASEIN LYTIC PROTEINASE B3)	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.96	Gma.8063.1.S1_at	BG511547	-	-	4e-7	At4g33985	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	16.3	0.94	Gma.11299.3.S1_x_at	BG045664	-	-	3e-25	At5g28840	GME (GDP-D-MANNOSE 3',5'-EPIMERASE)	O.I.	H.G.	S.X.	Please select
0.11	14.2	0.94	GmaAffx.61778.1.S1_at	AI965753	-	-	5e+0	At2g27250	CLV3 (CLAVATA3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	98.9	GSM209582	mock_0hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
7.0	98.8	GSM209591	mock_0hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.8	98.7	GSM209581	susceptible_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.6	98.7	GSM209590	susceptible_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.3	98.6	GSM245933	Leaf_Water Control_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
5.8	98.4	GSM245934	Leaf_Water Control_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
5.8	98.4	GSM245935	Leaf_Water Control_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
5.7	98.4	GSM245936	Leaf_LCO treated_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
5.5	98.3	GSM245938	Leaf_LCO treated_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
5.5	98.3	GSM245937	Leaf_LCO treated_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
5.2	98.1	GSM209573	mock_0hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.2	98.1	GSM209596	resistant_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.0	98.0	GSM209589	resistant_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.0	98.0	GSM209598	resistant_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.0	98.0	GSM209580	resistant_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.7	97.8	GSM209599	susceptible_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.5	97.7	GSM238041	Soybean-Bayfield-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.4	97.6	GSM209592	resistant_6hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.3	97.5	GSM209597	susceptible_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.2	97.4	GSM209594	resistant_12hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.2	97.4	GSM209584	susceptible_6hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.1	97.3	GSM209595	susceptible_12hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.0	97.2	GSM170926	Rust Innoculated, biological rep1	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
3.9	97.1	GSM238060	Soybean-S03W4-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.9	97.1	GSM170924	V2 Control, biological rep1	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
3.9	97.1	GSM209577	susceptible_12hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.9	97.1	GSM209578	resistant_24hours_rep1 *failed QC*	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.8	97.0	GSM209586	susceptible_12hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.8	97.0	GSM238058	Soybean-S03W4-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.7	96.8	GSM238038	Soybean-Bayfield-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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