Co-expression analysis

Gene ID GmaAffx.83734.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g23280: TCP family transcription factor, putative (HF=8e-2)
Module size 6 genes
NF 0.64
%ile 92.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8091.50.96GmaAffx.83734.1.S1_atBG155371--8e-2At5g23280TCP family transcription factor, putativeO.I.H.G.S.X.
0.6786.10.96GmaAffx.83311.1.S1_atAW459839--9e-1At4g10080unknown proteinO.I.H.G.S.X.
0.6080.70.96GmaAffx.1166.1.S1_atBE822888Dof20-2e-4At3g47500CDF3 (CYCLING DOF FACTOR 3)O.I.H.G.S.X.
0.5576.30.96GmaAffx.1166.2.S1_atBM732418Dof20-3e-16At3g47500CDF3 (CYCLING DOF FACTOR 3)O.I.H.G.S.X.
0.5071.70.97GmaAffx.63814.1.S1_atBG839712--3e-4At5g62430CDF1 (CYCLING DOF FACTOR 1)O.I.H.G.S.X.
0.4766.60.95GmaAffx.20956.1.S1_atAW705556MYB transcription factor MYB118-6e-43At5g02840LCL1 (LHY/CCA1-like 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.799.1GSM209591mock_0hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
5.098.0GSM209582mock_0hours_rep2GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
4.897.9GSM209573mock_0hours_rep1GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
4.397.5GSM209590susceptible_48hours_rep2GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
4.097.2GSM209596resistant_24hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
3.997.1GSM29257686_1283.1H.R180U, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.796.8GSM209579susceptible_24hours_rep1 *failed QC*GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
3.396.2GSM29253347_1288.1H.R182P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.296.0GSM29251228_1284.1H.R180P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.296.0GSM29282582_C184.1K.R9K1P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.095.6GSM209589resistant_48hours_rep2GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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