Co-expression analysis

Gene ID	GmaAffx.83609.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g44910: ATHB4 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4) (HF=1e-12)
Module size	6 genes
NF	0.01
%ile	5.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	76.3	0.85	GmaAffx.83609.1.S1_at	BU926787	-	-	1e-12	At2g44910	ATHB4 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.86	Gma.11030.1.S1_at	BE190894	-	-	6e-2	At4g36770	UDP-glycosyltransferase/ transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.84	GmaAffx.24869.1.S1_at	CA938627	-	-	2e-12	At3g27230	-	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.89	Gma.12996.1.A1_at	AW306798	-	-	3e-4	At3g09820	ADK1 (adenosine kinase 1)	O.I.	H.G.	S.X.	Please select
0.02	4.5	0.86	GmaAffx.89702.1.A1_at	CK606092	-	-	2e-1	At5g18290	SIP1	O.I.	H.G.	S.X.	Please select
-	1.4	0.86	Gma.725.1.S1_at	CA803003	-	-	7e-14	At4g36190	serine-type peptidase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.3	99.7	GSM147938	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
20.0	99.7	GSM147937	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
12.9	99.5	GSM182032	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
12.0	99.4	GSM182033	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
11.8	99.4	GSM182034	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
7.5	98.9	GSM191078	Soybean_Cotyledon_SUS2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
7.2	98.9	GSM191077	Soybean_Cotyledon_SUS1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.1	97.3	GSM147936	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.9	97.1	GSM147941	Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.6	96.7	GSM201109	Laser capture microdissected (LCM) cotyledon abaxial epidermis at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.6	96.7	GSM201118	Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.5	96.6	GSM201104	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.4	96.4	GSM147934	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.3	96.2	GSM147933	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.1	95.8	GSM201108	Laser capture microdissected (LCM) cotyledon abaxial epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.0	95.6	GSM201105	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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