Co-expression analysis

Gene ID	GmaAffx.83362.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g20140: SOUL heme-binding family protein (HF=2e-9)
Module size	8 genes
NF	0.65
%ile	92.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	74.2	0.90	GmaAffx.83362.1.S1_at	AW119427	-	-	2e-9	At5g20140	SOUL heme-binding family protein	O.I.	H.G.	S.X.	Please select
0.82	91.9	0.91	Gma.13817.1.S1_at	BE611811	-	-	4e-19	At2g37240	-	O.I.	H.G.	S.X.	Please select
0.71	87.8	0.92	Gma.15039.2.S1_at	BQ094874	-	-	1e+1	At5g12140	ATCYS1 (A. thaliana cystatin-1)	O.I.	H.G.	S.X.	Please select
0.71	87.8	0.93	Gma.13330.2.S1_at	BM086191	-	-	8e-1	At5g57040	lactoylglutathione lyase family protein / glyoxalase I family protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.92	Gma.16607.1.S1_at	CD412243	-	-	3e-2	At5g51110	4-alpha-hydroxytetrahydrobiopterin dehydratase	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.92	GmaAffx.32901.2.S1_at	BU090282	-	-	5e-2	At5g62500	ATEB1B (END BINDING PROTEIN 1B)	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.92	Gma.1378.1.S1_at	BU545795	-	-	5e-13	At3g24190	ABC1 family protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.91	Gma.13330.1.S1_at	BM178198	-	-	1e-9	At5g57040	lactoylglutathione lyase family protein / glyoxalase I family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.3	99.7	GSM209581	susceptible_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
16.0	99.6	GSM209580	resistant_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
14.3	99.6	GSM209599	susceptible_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
12.8	99.5	GSM209598	resistant_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
12.5	99.5	GSM209591	mock_0hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
12.2	99.5	GSM170926	Rust Innoculated, biological rep1	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
12.1	99.5	GSM209590	susceptible_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
11.8	99.4	GSM209582	mock_0hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
10.9	99.4	GSM170924	V2 Control, biological rep1	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
9.6	99.2	GSM209589	resistant_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
9.3	99.2	GSM170927	Rust Innoculated, biological rep2	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
8.6	99.1	GSM209573	mock_0hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
8.5	99.1	GSM170928	V2 Control, biological rep3	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
8.0	99.0	GSM209597	susceptible_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
7.5	98.9	GSM170925	V2 Control, biological rep2	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
7.0	98.8	GSM209596	resistant_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
7.0	98.8	GSM209587	resistant_24hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.2	98.6	GSM170929	Rust Innoculated, biological rep3	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
5.5	98.3	GSM238041	Soybean-Bayfield-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.8	97.9	GSM245934	Leaf_Water Control_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
4.8	97.9	GSM245936	Leaf_LCO treated_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
4.4	97.6	GSM245937	Leaf_LCO treated_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
4.3	97.5	GSM238038	Soybean-Bayfield-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.1	97.3	GSM245933	Leaf_Water Control_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
4.0	97.2	GSM238039	Soybean-Bayfield-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.9	97.1	GSM238060	Soybean-S03W4-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.9	97.1	GSM245938	Leaf_LCO treated_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
3.9	97.1	GSM238031	Soybean-2601R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.8	97.0	GSM238055	Soybean-PS46R-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.8	97.0	GSM209592	resistant_6hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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