Co-expression analysis

Gene ID	GmaAffx.83135.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g00080: UNE11 (unfertilized embryo sac 11) (HF=8e-1)
Module size	11 genes
NF	0.11
%ile	29.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.4	0.92	GmaAffx.83135.1.S1_at	BQ453029	-	-	8e-1	At4g00080	UNE11 (unfertilized embryo sac 11)	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.95	GmaAffx.83206.1.S1_at	BE610184	-	-	2e-2	At3g26210	CYP71B23	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.96	GmaAffx.70346.1.S1_at	BU964958	-	-	5e+0	At4g01940	NFU1	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.97	GmaAffx.93335.1.S1_s_at	CF806304	-	-	7e-52	At3g13920	EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1)	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.97	GmaAffx.92678.1.S1_s_at	CF808403	-	-	6e-35	At2g34850	MEE25 (maternal effect embryo arrest 25)	O.I.	H.G.	S.X.	Please select
0.13	16.3	0.97	GmaAffx.85706.1.S1_at	BG882274	-	-	3e-30	At2g35020	UTP--glucose-1-phosphate uridylyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.11	14.2	0.95	GmaAffx.90541.1.S1_s_at	CF806266	-	-	6e-18	At5g22060	ATJ2	O.I.	H.G.	S.X.	Please select
0.08	11.0	0.97	GmaAffx.88130.1.S1_at	BU082486	-	-	1e-17	At1g04400	CRY2 (CRYPTOCHROME 2)	O.I.	H.G.	S.X.	Please select
0.06	9.0	0.96	Gma.13074.2.S1_a_at	BI972676	-	-	2e-11	At5g18650	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.04	7.0	0.97	GmaAffx.21491.1.S1_at	AW832637	-	-	3e+0	At5g49480	ATCP1 (Ca2+-binding protein 1)	O.I.	H.G.	S.X.	Please select
0.04	7.0	0.96	GmaAffx.49918.1.S1_at	BG362868	-	-	3e-22	At4g02670	AtIDD12 (Arabidopsis thaliana Indeterminate(ID)-Domain 12)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1615383_at, orthologous to the query gene, GmaAffx.83135.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.6	1615383_at	At4g00080	hypothetical protein LOC100256151	-	1e-3	At4g32272	-	O.I.	H.G.	S.X.	Please select
0.56	79.4	1616994_at	At4g00080	hypothetical protein LOC100255493	-	1e+0	At1g76710	SDG26 (SET DOMAIN GROUP 26)	O.I.	H.G.	S.X.	Please select
0.53	75.2	1611377_at	At4g00080	hypothetical protein LOC100263077	-	7e-5	At5g65910	BSD domain-containing protein	O.I.	H.G.	S.X.	Please select
0.52	73.9	1609463_at	At4g00080	hypothetical protein LOC100267895	-	3e-1	At2g34720	NF-YA4 (NUCLEAR FACTOR Y, SUBUNIT A4)	O.I.	H.G.	S.X.	Please select
0.46	66.5	1613133_at	At4g00080	similar to putative C-type U1 snRNP	-	2e-31	At4g03120	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	1610856_at	At4g00080	hypothetical protein LOC100247389	-	9e-27	At4g36960	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1611865_at	At4g00080	-	-	1e+0	At5g47100	CBL9	O.I.	H.G.	S.X.	Please select
0.42	60.1	1620406_s_at	At4g00080	hypothetical protein LOC100245316	-	5e-34	At1g29850	double-stranded DNA-binding family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	1606915_at	At4g00080	hypothetical protein LOC100267395	-	9e-8	At4g15130	catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferase	O.I.	H.G.	S.X.	Please select
0.37	51.7	1615494_at	At4g00080	hypothetical protein LOC100251050	-	1e+0	At2g19720	rps15ab (ribosomal protein S15A B)	O.I.	H.G.	S.X.	Please select
0.34	46.8	1619017_at	At4g00080	hypothetical protein LOC100246267	-	4e+0	At5g24890	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1609066_at	At4g00080	hypothetical protein LOC100241642	-	1e-7	At3g29270	ubiquitin-protein ligase	O.I.	H.G.	S.X.	Please select
0.30	39.4	1606730_at	At4g00080	similar to N-acetylglucosaminyltransferase I	-	3e+0	At1g59670	ATGSTU15 (GLUTATHIONE S-TRANSFERASE TAU 15)	O.I.	H.G.	S.X.	Please select
0.29	37.7	1615030_at	At4g00080	similar to EMB2735 (EMBRYO DEFECTIVE 2735)	-	1e-16	At5g06240	emb2735 (embryo defective 2735)	O.I.	H.G.	S.X.	Please select
0.28	37.7	1615418_at	At4g00080	hypothetical protein LOC100256204	-	2e-13	At5g02040	PRA1.A1 (PRENYLATED RAB ACCEPTOR 1.A1)	O.I.	H.G.	S.X.	Please select
0.26	32.0	1618036_at	At4g00080	hypothetical protein LOC100264427	-	6e-4	At2g42390	protein kinase C substrate, heavy chain-related	O.I.	H.G.	S.X.	Please select
0.25	30.5	1619758_s_at	At4g00080	hypothetical protein LOC100254356	-	1e+0	At3g01600	anac044 (Arabidopsis NAC domain containing protein 44)	O.I.	H.G.	S.X.	Please select
0.16	16.7	1606442_at	At4g00080	hypothetical protein LOC100246819	-	7e-59	At3g46010	ADF1 (ACTIN DEPOLYMERIZING FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.16	16.7	1621935_at	At4g00080	-	-	2e-136	At1g10430	PP2A-2	O.I.	H.G.	S.X.	Please select
0.14	14.4	1610075_at	At4g00080	hypothetical protein LOC100260337	-	1e+0	At5g18920	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage