Co-expression analysis

Gene ID	GmaAffx.8304.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g67290: FAD-dependent oxidoreductase family protein (HF=4e-21)
Module size	6 genes
NF	0.16
%ile	37.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.92	GmaAffx.8304.1.A1_at	BE822695	-	-	4e-21	At5g67290	FAD-dependent oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.97	GmaAffx.38113.1.S1_at	BQ454272	-	-	3e+0	At5g09980	PROPEP4 (Elicitor peptide 4 precursor)	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.97	GmaAffx.77944.3.S1_at	BE057167	-	-	6e-2	At4g39410	WRKY13	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.98	Gma.6354.2.S1_a_at	BQ613064	-	-	8e-4	At5g19350	RNA-binding protein 45 (RBP45), putative	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.97	Gma.11224.2.S1_s_at	BM091821	-	-	2e-3	At3g07560	PEX13 (PEROXIN 13)	O.I.	H.G.	S.X.	Please select
0.05	8.0	0.96	GmaAffx.25294.1.S1_at	BQ611727	-	-	2e-8	At1g20560	AAE1 (ACYL ACTIVATING ENZYME 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	97.5	GSM209585	resistant_12hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.9	97.1	GSM209594	resistant_12hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.8	97.0	GSM209577	susceptible_12hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.7	96.8	GSM209584	susceptible_6hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.7	96.8	GSM209578	resistant_24hours_rep1 *failed QC*	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.6	96.7	GSM201127	Laser capture microdissected (LCM) seed coat parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.6	96.7	GSM209595	susceptible_12hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.6	96.7	GSM209593	susceptible_6hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.6	96.7	GSM209583	resistant_6hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.5	96.6	GSM201126	Laser capture microdissected (LCM) seed coat parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.4	96.4	GSM209588	susceptible_24hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.3	96.2	GSM209574	resistant_6hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.3	96.2	GSM209596	resistant_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.2	96.0	GSM209587	resistant_24hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.2	96.0	GSM147937	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.0	95.6	GSM209591	mock_0hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.0	95.6	GSM201119	Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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