Co-expression analysis

Gene ID	GmaAffx.82510.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g37820: NIP4 (HF=1e-1)
Module size	6 genes
NF	0.03
%ile	12.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	92.5	0.97	GmaAffx.82510.1.S1_at	BG239314	-	-	1e-1	At5g37820	NIP4	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.97	GmaAffx.91578.1.S1_at	CF807303	-	-	6e-74	At3g54190	-	O.I.	H.G.	S.X.	Please select
0.14	17.5	0.97	Gma.15133.2.S1_a_at	BE803230	-	-	5e-1	At4g13860	glycine-rich RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.06	9.0	0.97	GmaAffx.32617.1.S1_at	AW395442	-	-	1e-42	At1g07360	zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.97	Gma.2337.2.S1_a_at	AW756331	-	-	1e-22	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.97	GmaAffx.27378.1.S1_at	BG654320	-	-	3e-4	At3g16270	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the barley gene, EBan01_SQ002_F13_at, orthologous to the query gene, GmaAffx.82510.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	EBan01_SQ002_F13_at	At5g37820	-	-	3e-1	At3g52230	unknown protein	O.I.	H.G.	S.X.	Please select
0.77	90.8	Contig3096_s_at	At5g37820	-	-	3e+0	At3g17170	RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3)	O.I.	H.G.	S.X.	Please select
0.73	88.7	Contig6434_at	At5g37820	-	-	3e-9	At1g07310	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.71	87.1	Contig8820_at	At5g37820	-	-	2e+0	At4g19270	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig9959_at	At5g37820	-	-	4e-4	At1g02840	SR1	O.I.	H.G.	S.X.	Please select
0.63	80.3	Contig13888_at	At5g37820	-	-	3e-2	At5g19940	plastid-lipid associated protein PAP-related / fibrillin-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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