Co-expression analysis

Gene ID	GmaAffx.82262.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g51770: ETO1 (ETHYLENE OVERPRODUCER 1) (HF=3e-28)
Module size	6 genes
NF	0.56
%ile	86.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.98	GmaAffx.82262.1.S1_at	BI786890	-	-	3e-28	At3g51770	ETO1 (ETHYLENE OVERPRODUCER 1)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.98	GmaAffx.36562.2.S1_at	BM731207	-	-	5e-15	At1g14970	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.98	Gma.13878.1.S1_at	CD408791	-	-	5e+0	At5g01070	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.98	GmaAffx.23963.1.S1_at	BQ080815	-	-	3e+0	At3g42310	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.98	GmaAffx.39172.1.S1_at	BM094230	-	-	2e-5	At1g12340	-	O.I.	H.G.	S.X.	Please select
0.21	26.6	0.98	GmaAffx.33415.1.A1_at	BU547602	-	-	3e-1	At5g54145	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
31.4	99.9	GSM308559	Mature Soybean (Glycine max) pollen grains Replicate 2	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
31.3	99.9	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
30.8	99.9	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.221.1.A1_at, orthologous to the query gene, GmaAffx.82262.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	65.7	ZmAffx.221.1.A1_at	At3g51770	-	-	8e-1	At5g64670	ribosomal protein L15 family protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	Zm.6828.1.A1_at	At3g51770	-	-	2e-1	At1g02710	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.3930.1.S1_at	At3g51770	AMP-binding protein	-	8e-37	At3g05970	LACS6 (long-chain acyl-CoA synthetase 6)	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.14524.1.S1_at	At3g51770	hypothetical protein LOC100272454	-	8e-3	At4g38620	MYB4	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.12746.1.A1_at	At3g51770	somatic embryogenesis related protein	-	1e+0	At2g18530	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.06	2.3	Zm.11328.1.A1_at	At3g51770	hypothetical protein LOC100274553	-	6e+0	At2g30130	ASL5	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage