Co-expression analysis

Gene ID	GmaAffx.82262.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g51770: ETO1 (ETHYLENE OVERPRODUCER 1) (HF=3e-28)
Module size	6 genes
NF	0.56
%ile	86.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.98	GmaAffx.82262.1.S1_at	BI786890	-	-	3e-28	At3g51770	ETO1 (ETHYLENE OVERPRODUCER 1)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.98	GmaAffx.36562.2.S1_at	BM731207	-	-	5e-15	At1g14970	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.98	Gma.13878.1.S1_at	CD408791	-	-	5e+0	At5g01070	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.98	GmaAffx.23963.1.S1_at	BQ080815	-	-	3e+0	At3g42310	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.98	GmaAffx.39172.1.S1_at	BM094230	-	-	2e-5	At1g12340	-	O.I.	H.G.	S.X.	Please select
0.21	26.6	0.98	GmaAffx.33415.1.A1_at	BU547602	-	-	3e-1	At5g54145	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
31.4	99.9	GSM308559	Mature Soybean (Glycine max) pollen grains Replicate 2	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
31.3	99.9	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
30.8	99.9	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen

Inter-species module comparison

A co-expression module including the grape gene, 1620887_at, orthologous to the query gene, GmaAffx.82262.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	80.6	1620887_at	At3g51770	-	-	3e+0	At1g50440	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.64	84.7	1618608_at	At3g51770	-	-	5e+0	At5g26210	AL4 (ALFIN-LIKE 4)	O.I.	H.G.	S.X.	Please select
0.58	79.8	1613001_a_at	At3g51770	hypothetical protein LOC100266839	-	1e-22	At1g52370	ribosomal protein L22 family protein	O.I.	H.G.	S.X.	Please select
0.56	79.4	1607051_x_at	At3g51770	-	-	9e-42	At5g35530	40S ribosomal protein S3 (RPS3C)	O.I.	H.G.	S.X.	Please select
0.54	75.7	1620156_at	At3g51770	-	-	2e+0	At4g00100	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)	O.I.	H.G.	S.X.	Please select
0.52	73.9	1622617_x_at	At3g51770	-	-	3e-25	At4g34460	AGB1 (GTP BINDING PROTEIN BETA 1)	O.I.	H.G.	S.X.	Please select
0.52	73.9	1616866_at	At3g51770	-	-	2e+0	At3g29035	ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.50	72.7	1615025_at	At3g51770	-	-	9e-42	At5g35530	40S ribosomal protein S3 (RPS3C)	O.I.	H.G.	S.X.	Please select
0.48	68.8	1621328_at	At3g51770	-	-	9e-1	At4g18470	SNI1	O.I.	H.G.	S.X.	Please select
0.46	66.5	1610244_x_at	At3g51770	hypothetical protein LOC100261052	-	1e-3	At4g15000	60S ribosomal protein L27 (RPL27C)	O.I.	H.G.	S.X.	Please select
0.44	64.1	1613734_at	At3g51770	-	-	4e-10	At5g40530	-	O.I.	H.G.	S.X.	Please select
0.41	58.7	1613664_at	At3g51770	-	-	7e-1	At2g17130	IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1610198_at	At3g51770	-	-	4e-6	At5g60800	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	1614101_at	At3g51770	-	-	4e+0	At5g45973	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1613174_at	At3g51770	-	-	4e-4	At4g01000	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	1606703_at	At3g51770	-	-	5e+0	At3g13882	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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