CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID GmaAffx.82262.1.S1_at

Gene name
Homology with Arabidopsis Similar to At3g51770: ETO1 (ETHYLENE OVERPRODUCER 1) (HF=3e-28)

Module size 6 genes

NF 0.56

%ile 86.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 0.98 GmaAffx.82262.1.S1_at BI786890 - - 3e-28 At3g51770 ETO1 (ETHYLENE OVERPRODUCER 1) O.I. H.G. S.X.
0.67 86.1 0.98 GmaAffx.36562.2.S1_at BM731207 - - 5e-15 At1g14970 unknown protein O.I. H.G. S.X.
0.61 81.8 0.98 Gma.13878.1.S1_at CD408791 - - 5e+0 At5g01070 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.53 74.2 0.98 GmaAffx.23963.1.S1_at BQ080815 - - 3e+0 At3g42310 unknown protein O.I. H.G. S.X.
0.36 50.8 0.98 GmaAffx.39172.1.S1_at BM094230 - - 2e-5 At1g12340 - O.I. H.G. S.X.
0.21 26.6 0.98 GmaAffx.33415.1.A1_at BU547602 - - 3e-1 At5g54145 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
31.4 99.9 GSM308559 Mature Soybean (Glycine max) pollen grains Replicate 2 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
31.3 99.9 GSM308556 Mature Soybean (Glycine max) pollen grains replicate 1 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
30.8 99.9 GSM308560 Mature Soybean (Glycine max) pollen grains Replicate 3 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g51770, orthologous to the query gene, GmaAffx.82262.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.70 83.5 At3g51770 824340 ETO1 (ETHYLENE OVERPRODUCER 1) Encodes a negative regulator of 1-aminocyclopropane-1-carboxylic acid synthase5(ACS5), which catalyze the rate-limiting step in ethylene biosynthesis. ETO1 directly interacts with ACS5 and inhibits its enzyme activity and targets it for degradation via proteasome-dependent pathway. It also interacts with CUL3 (a component of ubiquitin ligase complexes). eto1 (and eto3) mutations elevate ethylene biosynthesis by affecting the posttranscriptional regulation of ACS O.I. H.G. S.X.
0.78 88.6 At1g06700 837180 serine/threonine protein kinase, putative F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. H.G. S.X.
0.78 88.6 At1g10740 837617 unknown protein F:unknown;P:glycerol biosynthetic process;C:endomembrane system;BOPFM O.I. H.G. S.X.
0.70 83.5 At5g47620 834812 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBA O.I. H.G. S.X.
0.69 82.9 At1g05960 837106 binding F:binding;P:biological_process unknown;C:plasma membrane;MFPBO O.I. H.G. S.X.
0.68 82.2 At2g19880 816507 ceramide glucosyltransferase, putative F:ceramide glucosyltransferase activity;P:biological_process unknown;C:endomembrane system;MBPFAO O.I. H.G. S.X.
0.67 81.6 At1g54920 841930 unknown protein F:molecular_function unknown;P:biological_process unknown;C:membrane;MOPFB O.I. H.G. S.X.
0.64 78.9 At3g12620 820442 protein phosphatase 2C family protein / PP2C family protein F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;PMOFBV O.I. H.G. S.X.
0.60 75.7 At3g07880 819979 Rho GDP-dissociation inhibitor family protein F:Rho GDP-dissociation inhibitor activity;P:biological_process unknown;C:cytoplasm;MFPO O.I. H.G. S.X.
0.59 74.7 At3g62660 825440 GATL7 (Galacturonosyltransferase-like 7) Encodes a protein with putative galacturonosyltransferase activity. O.I. H.G. S.X.
0.58 73.8 At4g20380 827786 zinc finger protein (LSD1) LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge O.I. H.G. S.X.
0.58 73.8 At5g16480 831509 tyrosine specific protein phosphatase family protein F:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FOPBM O.I. H.G. S.X.
0.56 73.0 At5g58950 836012 protein kinase family protein F:protein serine/threonine/tyrosine kinase activity, kinase activity;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MPOFBVA O.I. H.G. S.X.
0.54 69.5 At4g00110 828145 GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3) Encodes a putative membrane-anchored UDP-D-glucuronate 4-epimerase. O.I. H.G. S.X.
0.52 67.4 At1g22200 838825 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MOFP O.I. H.G. S.X.
0.52 67.4 At1g10660 837609 unknown protein F:unknown;P:unknown;C:endomembrane system;PMF O.I. H.G. S.X.
0.52 67.4 At3g09760 820134 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMFOVB O.I. H.G. S.X.
0.50 65.3 At2g40620 818657 bZIP transcription factor family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFB O.I. H.G. S.X.
0.50 65.3 At3g57480 824915 zinc finger (C2H2 type, AN1-like) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:intracellular;MFOP O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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