Co-expression analysis

Gene ID	GmaAffx.81233.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g58650: PSY1 (plant peptide containing sulfated tyrosine 1) (HF=3e+0)
Module size	10 genes
NF	0.75
%ile	97.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.8	0.91	GmaAffx.81233.1.A1_at	BE823605	-	-	3e+0	At5g58650	PSY1 (plant peptide containing sulfated tyrosine 1)	O.I.	H.G.	S.X.	Please select
0.86	93.0	0.88	Gma.1880.1.A1_x_at	BE658245	-	-	3e+0	At5g43185	Expressed protein	O.I.	H.G.	S.X.	Please select
0.78	90.6	0.90	GmaAffx.36259.1.S1_s_at	BG649950	-	-	9e+0	At5g38920	nucleic acid binding / ribonuclease H	O.I.	H.G.	S.X.	Please select
0.76	89.7	0.89	Gma.226.1.S1_s_at	X60772.1	24 kDa oleosin isoform	-	4e-1	At5g64850	unknown protein	O.I.	H.G.	S.X.	Please select
0.75	89.5	0.86	GmaAffx.54955.1.S1_at	BI786528	dehydrin	-	3e-10	At5g12210	geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative	O.I.	H.G.	S.X.	Please select
0.74	89.2	0.88	GmaAffx.79733.1.S1_s_at	AI748104	Kunitz trypsin inhibitor /// trypsin inhibitor subtype A /// trypsin inhibitor subtype B	-	1e+1	At5g58070	TIL (TEMPERATURE-INDUCED LIPOCALIN)	O.I.	H.G.	S.X.	Please select
0.73	88.9	0.87	Gma.1880.1.A1_at	BE658245	-	-	3e+0	At5g43185	Expressed protein	O.I.	H.G.	S.X.	Please select
0.70	87.1	0.89	GmaAffx.75778.1.S1_at	BM270359	-	-	9e-2	At5g07550	GRP19 (GLYCINE-RICH PROTEIN 19)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.87	Gma.959.1.S1_at	BM270102	-	-	2e+0	At3g06035	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.88	Gma.17940.1.S1_at	BE824192	-	-	4e-1	At3g12320	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.2	99.5	GSM201096	Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
12.3	99.5	GSM201097	Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
11.1	99.4	GSM201113	Laser capture microdissected (LCM) cotyledon adaxial epidermis at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
10.6	99.3	GSM201098	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
10.6	99.3	GSM201099	Laser capture microdissected (LCM) axis plumule at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
10.5	99.3	GSM201100	Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
10.3	99.3	GSM201101	Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
9.3	99.2	GSM201106	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
9.2	99.2	GSM201105	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
9.2	99.2	GSM201104	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
9.2	99.2	GSM201112	Laser capture microdissected (LCM) cotyledon adaxial epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
8.7	99.1	GSM309341	Wild type 1	GSE12300	Suppression of oleosin in soybean cotyledon
8.5	99.1	GSM201109	Laser capture microdissected (LCM) cotyledon abaxial epidermis at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
8.3	99.1	GSM201110	Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
8.2	99.0	GSM201114	Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
8.1	99.0	GSM309342	Wild type 2	GSE12300	Suppression of oleosin in soybean cotyledon
8.1	99.0	GSM309528	storage protein suppression expt, control tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
8.1	99.0	GSM201107	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
8.0	99.0	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
7.9	99.0	GSM201116	Laser capture microdissected (LCM) cotyledon vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
7.9	99.0	GSM309343	transgenic RNAiOleosin, biol rep 1, tech rep 1	GSE12300	Suppression of oleosin in soybean cotyledon
7.8	99.0	GSM309527	storage protein suppression expt, control tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
7.6	98.9	GSM201115	Laser capture microdissected (LCM) cotyledon adaxial parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
7.6	98.9	GSM201111	Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
7.4	98.9	GSM201117	Laser capture microdissected (LCM) cotyledon vascular bundle at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
7.3	98.9	GSM309344	transgenic RNAiOleosin, biol rep 1, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon
7.2	98.9	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
7.2	98.9	GSM201108	Laser capture microdissected (LCM) cotyledon abaxial epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
7.1	98.8	GSM201103	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
7.1	98.8	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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