Co-expression analysis

Gene ID GmaAffx.79139.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g73590: PIN1 (PIN-FORMED 1) (HF=3e-16)
Module size 44 genes
NF 0.10
%ile 28.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9699.60.84GmaAffx.79139.1.S1_atBM309694--3e-16At1g73590PIN1 (PIN-FORMED 1)O.I.H.G.S.X.
0.2329.90.91Gma.5297.1.S1_s_atBM092144--1e-5At3g19540unknown proteinO.I.H.G.S.X.
0.2228.10.89Gma.3829.1.S1_atAI966815--8e-4At4g00200DNA bindingO.I.H.G.S.X.
0.2228.10.95GmaAffx.28335.1.S1_atAW755682--1e-5At3g49250DMS3 (DEFECTIVE IN MERISTEM SILENCING 3)O.I.H.G.S.X.
0.1923.70.94Gma.2496.1.S1_atAF244888.1receptor-like protein kinase 1-1e-75At5g65700BAM1 (BARELY ANY MERISTEM 1)O.I.H.G.S.X.
0.1822.30.88Gma.12996.1.A1_atAW306798--3e-4At3g09820ADK1 (adenosine kinase 1)O.I.H.G.S.X.
0.1721.20.95Gma.7761.1.S1_a_atBU549564--1e-10At3g12280RBR1 (RETINOBLASTOMA-RELATED 1)O.I.H.G.S.X.
0.1721.20.96Gma.9417.1.S1_atCA802413--6e-1At2g36700pectinesterase family proteinO.I.H.G.S.X.
0.1721.20.96Gma.2949.1.S1_atCA936899--4e-1At5g14550unknown proteinO.I.H.G.S.X.
0.1721.20.95GmaAffx.11160.1.S1_atBG237523--7e-7At2g42120POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT)O.I.H.G.S.X.
0.1721.20.95GmaAffx.64395.1.S1_atBM093801--8e-1At5g20060phospholipase/carboxylesterase family proteinO.I.H.G.S.X.
0.1619.70.95GmaAffx.21872.1.S1_atBE609318--2e+0At3g03210unknown proteinO.I.H.G.S.X.
0.1619.70.95Gma.442.1.S1_atBU764539--2e+0At3g23970F-box family proteinO.I.H.G.S.X.
0.1518.70.94GmaAffx.61039.1.S1_atBI892886--1e-1At3g06130heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.1417.50.93GmaAffx.2545.1.A1_atBE658789--4e-2At5g52500unknown proteinO.I.H.G.S.X.
0.1316.30.97GmaAffx.41169.1.A1_atAW351223--2e+0At3g57250emsy N terminus domain-containing protein / ENT domain-containing proteinO.I.H.G.S.X.
0.1215.10.95Gma.13376.1.A1_atCD394185--2e-2At3g03180Got1-like family proteinO.I.H.G.S.X.
0.1215.10.96Gma.7776.1.A1_atCD399260--2e+0At1g47770beta-galactosidaseO.I.H.G.S.X.
0.1215.10.92Gma.15599.1.A1_atCD402283--7e-1At2g42220rhodanese-like domain-containing proteinO.I.H.G.S.X.
0.1114.20.94Gma.17365.1.S1_atBQ741669--5e-5At4g22360SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.1114.20.93Gma.1958.1.S1_atAW309336--2e-6At4g28440DNA-binding protein-relatedO.I.H.G.S.X.
0.1013.00.95Gma.6556.1.S1_atCA782240--3e-7At3g51030ATTRX1O.I.H.G.S.X.
0.1013.00.94Gma.792.1.S1_atBG155242--5e+0At3g03350binding / catalytic/ oxidoreductaseO.I.H.G.S.X.
0.1013.00.96Gma.8091.1.S1_atBI317520--3e+0At1g10586transcription regulatorO.I.H.G.S.X.
0.1013.00.95GmaAffx.45390.1.S1_atBU763525--7e+0At4g08485-O.I.H.G.S.X.
0.1013.00.96GmaAffx.26739.1.S1_atBI315875--2e+0At4g34080unknown proteinO.I.H.G.S.X.
0.0912.00.93GmaAffx.7188.1.S1_atAW348536--3e-2At1g78310VQ motif-containing proteinO.I.H.G.S.X.
0.0912.00.95Gma.13541.1.S1_atBM092024--3e+0At4g16447unknown proteinO.I.H.G.S.X.
0.0912.00.95GmaAffx.44378.1.S1_atBE211705--9e-1At4g19985GCN5-related N-acetyltransferase (GNAT) family proteinO.I.H.G.S.X.
0.0912.00.96Gma.4090.1.A1_atAW310063--1e-4At4g40000NOL1/NOP2/sun family proteinO.I.H.G.S.X.
0.0912.00.93Gma.2269.1.S1_atBI321941--5e-1At1g49520SWIB complex BAF60b domain-containing proteinO.I.H.G.S.X.
0.0912.00.91Gma.3354.1.S1_atBQ454200--1e+0At3g18250unknown proteinO.I.H.G.S.X.
0.0811.00.96GmaAffx.25596.1.S1_atBE823050--2e+0At2g21780unknown proteinO.I.H.G.S.X.
0.0811.00.94GmaAffx.51217.1.S1_atBF219546--1e+0At5g34830unknown proteinO.I.H.G.S.X.
0.0811.00.95GmaAffx.32692.1.S1_atBM522511--1e+0Atcg00430-O.I.H.G.S.X.
0.0811.00.95Gma.12284.1.S1_atAI960163--4e-17At1g34270exostosin family proteinO.I.H.G.S.X.
0.069.00.93GmaAffx.17752.1.S1_atBI784858--1e-4At4g27780ACBP2 (ACYL-COA BINDING PROTEIN ACBP 2)O.I.H.G.S.X.
0.069.00.94Gma.4769.1.S1_atAW310445--1e-17At5g06750protein phosphatase 2C family protein / PP2C family proteinO.I.H.G.S.X.
0.058.00.96GmaAffx.12944.1.A1_atBE823852--3e+0At5g23210SCPL34O.I.H.G.S.X.
0.047.00.95Gma.2148.1.S1_atCD406397--9e+0At3g24730catalyticO.I.H.G.S.X.
0.047.00.94Gma.10751.1.S1_a_atBI970499--5e-10At2g42680MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)O.I.H.G.S.X.
0.035.80.95Gma.3029.1.S1_atBI970589--2e-9At1g53645hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.035.80.96Gma.12214.1.S1_atBG653814--5e-11At3g07370CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN)O.I.H.G.S.X.
0.024.50.95Gma.7303.1.S1_atBQ612122--1e+0At5g19300-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.299.2GSM147937Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
8.399.1GSM147938Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 3GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
6.998.8GSM147933Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
6.298.6GSM147934Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
6.198.5GSM201105Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
5.998.5GSM182031Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 3GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.398.2GSM201104Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
5.298.1GSM182030Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.298.1GSM182041Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.298.1GSM182034Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 3GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.098.0GSM182029Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.098.0GSM147950Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 3GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
5.098.0GSM182033Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
4.998.0GSM182042Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
4.897.9GSM191075Soybean_Cotyledon_EP1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
4.797.8GSM147949Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
4.797.8GSM147935Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 3GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
4.597.7GSM201102Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
4.597.7GSM258503Soybean shoot apical meristem, 2 short-day replicate BGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
4.597.7GSM147948Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
4.397.5GSM201107Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
4.397.5GSM191076Soybean_Cotyledon_EP2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
4.197.3GSM191078Soybean_Cotyledon_SUS2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
4.097.2GSM237068Soy_shoot apical meristemGSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
4.097.2GSM258497Soybean Shoot Apical Meristem, 1 short-day treatmentGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
4.097.2GSM201103Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
4.097.2GSM258502Vegetative shoot apical meristem, replicate BGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
4.097.2GSM258504Soybean shoot apical meristem, 4 short-day replicate BGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO
3.997.1GSM237069Soy_shoot apical meristem2GSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
3.897.0GSM191085Soybean_Cotyledon_HI1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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