CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID GmaAffx.77917.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g13260: unknown protein (HF=1e-26)

Module size 6 genes

NF 0.43

%ile 73.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.47 66.6 0.97 GmaAffx.77917.1.S1_at BU965283 - - 1e-26 At5g13260 unknown protein O.I. H.G. S.X.
0.50 71.7 0.97 GmaAffx.77917.2.S1_at BM309510 - - 2e-4 At3g48860 unknown protein O.I. H.G. S.X.
0.50 71.7 0.97 GmaAffx.43012.1.S1_at AW733354 - - 1e-8 At2g35110 GRL (GNARLED) O.I. H.G. S.X.
0.40 57.1 0.98 GmaAffx.75246.1.S1_at AW508335 - - 2e-14 At1g60800 NIK3 (NSP-INTERACTING KINASE 3) O.I. H.G. S.X.
0.30 40.4 0.97 Gma.13221.2.S1_at BU082968 - - 1e+0 At1g51390 NFU5 O.I. H.G. S.X.
0.29 39.0 0.97 Gma.1155.1.S1_at BE805343 - - 6e-6 At1g13750 calcineurin-like phosphoesterase family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.5 96.6 GSM309530 storage protein suppression expt, RNAi biol rep2, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
3.5 96.6 GSM309557 storage protein suppression expt, RNAi biol rep1, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
3.4 96.4 GSM309529 storage protein suppression expt, RNAi biol rep1, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
3.2 96.0 GSM309531 storage protein suppression expt, RNAi biol rep2, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons

Inter-species module comparison

A co-expression module including the maize gene, Zm.975.1.A1_at, orthologous to the query gene, GmaAffx.77917.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.89 96.8 Zm.975.1.A1_at At5g13260 hypothetical protein LOC100274388 - 3e-2 At4g27660 unknown protein O.I. H.G. S.X.
0.65 82.1 Zm.3048.2.A1_at At5g13260 hypothetical protein LOC100277239 - 2e-5 At2g31490 unknown protein O.I. H.G. S.X.
0.61 79.5 Zm.5687.1.A1_at At5g13260 - - 5e-4 At1g30270 CIPK23 (CBL-INTERACTING PROTEIN KINASE 23) O.I. H.G. S.X.
0.59 76.1 Zm.3044.2.S1_a_at At5g13260 - - 8e-1 At1g59835 unknown protein O.I. H.G. S.X.
0.59 76.1 Zm.3044.2.A1_at At5g13260 - - 8e-1 At1g59835 unknown protein O.I. H.G. S.X.
0.55 71.6 Zm.15843.1.S1_at At5g13260 hypothetical protein LOC100275209 - 9e-1 At2g39770 CYT1 (CYTOKINESIS DEFECTIVE 1) O.I. H.G. S.X.
0.50 65.7 Zm.3044.1.S1_at At5g13260 - - 2e-10 At1g27900 RNA helicase, putative O.I. H.G. S.X.
0.40 48.5 Zm.5723.1.A1_at At5g13260 fiber protein Fb2 - 9e-3 At4g33740 unknown protein O.I. H.G. S.X.
0.36 41.3 Zm.3379.1.A1_at At5g13260 hypothetical protein LOC100272941 - 1e+0 At3g59250 F-box family protein O.I. H.G. S.X.
0.36 41.3 Zm.7570.1.A1_at At5g13260 flavonol synthase-like protein - 2e-2 At3g50210 2-oxoacid-dependent oxidase, putative O.I. H.G. S.X.
0.33 36.0 Zm.7797.1.A1_at At5g13260 mitochondrial import inner membrane translocase subunit Tim8 - 4e+0 At5g44060 unknown protein O.I. H.G. S.X.
0.32 33.4 Zm.6077.1.A1_at At5g13260 - - 6e-19 At2g31810 acetolactate synthase small subunit, putative O.I. H.G. S.X.
0.31 31.6 Zm.5141.1.A1_at At5g13260 - - 2e-60 At1g69960 PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A) O.I. H.G. S.X.
0.30 29.8 Zm.6984.8.A1_a_at At5g13260 Hypothetical protein LOC100193571 - 4e+0 At5g28615 - O.I. H.G. S.X.
0.26 22.7 Zm.17145.1.S1_at At5g13260 transparent leaf area peptide - 9e-1 At3g29020 MYB110 (myb domain protein 110) O.I. H.G. S.X.
0.24 19.8 Zm.6116.1.A1_at At5g13260 - - 9e-16 At3g02320 RNA binding / tRNA (guanine-N2-)-methyltransferase O.I. H.G. S.X.
0.23 18.6 Zm.5835.1.S1_at At5g13260 hypothetical protein LOC100275314 - 6e-9 At2g05310 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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