Co-expression analysis

Gene ID	GmaAffx.77917.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g13260: unknown protein (HF=1e-26)
Module size	6 genes
NF	0.43
%ile	73.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.47	66.6	0.97	GmaAffx.77917.1.S1_at	BU965283	-	-	1e-26	At5g13260	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.97	GmaAffx.77917.2.S1_at	BM309510	-	-	2e-4	At3g48860	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.97	GmaAffx.43012.1.S1_at	AW733354	-	-	1e-8	At2g35110	GRL (GNARLED)	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	GmaAffx.75246.1.S1_at	AW508335	-	-	2e-14	At1g60800	NIK3 (NSP-INTERACTING KINASE 3)	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.97	Gma.13221.2.S1_at	BU082968	-	-	1e+0	At1g51390	NFU5	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.97	Gma.1155.1.S1_at	BE805343	-	-	6e-6	At1g13750	calcineurin-like phosphoesterase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	96.6	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.5	96.6	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.4	96.4	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.2	96.0	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons

Inter-species module comparison

A co-expression module including the grape gene, 1610120_at, orthologous to the query gene, GmaAffx.77917.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	72.7	1610120_at	At5g13260	hypothetical protein LOC100265532	-	1e+0	At2g36080	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.56	79.4	1616093_at	At5g13260	similar to pectin methylesterase 1	-	6e-2	At4g33220	enzyme inhibitor/ pectinesterase	O.I.	H.G.	S.X.	Please select
0.47	67.7	1608397_at	At5g13260	hypothetical protein LOC100250547	-	4e+0	At3g26420	ATRZ-1A	O.I.	H.G.	S.X.	Please select
0.43	61.5	1621847_at	At5g13260	hypothetical protein LOC100267426	-	4e+0	At4g17310	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	1613602_at	At5g13260	hypothetical LOC100254354	-	8e+0	At5g02470	DPA	O.I.	H.G.	S.X.	Please select
0.36	50.7	1606948_at	At5g13260	hypothetical protein LOC100266705	-	2e-2	At1g74530	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1622124_at	At5g13260	-	-	2e+0	At2g22570	NIC1 (NICOTINAMIDASE 1)	O.I.	H.G.	S.X.	Please select
0.24	28.7	1607162_s_at	At5g13260	-	-	3e+0	At2g30570	PSBW (PHOTOSYSTEM II REACTION CENTER W)	O.I.	H.G.	S.X.	Please select
0.11	11.3	1619805_at	At5g13260	similar to leucine-rich repeat protein-related	-	4e-9	At1g25570	leucine-rich repeat protein-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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