Co-expression analysis

Gene ID	GmaAffx.77917.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g13260: unknown protein (HF=1e-26)
Module size	6 genes
NF	0.43
%ile	73.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.47	66.6	0.97	GmaAffx.77917.1.S1_at	BU965283	-	-	1e-26	At5g13260	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.97	GmaAffx.77917.2.S1_at	BM309510	-	-	2e-4	At3g48860	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.97	GmaAffx.43012.1.S1_at	AW733354	-	-	1e-8	At2g35110	GRL (GNARLED)	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	GmaAffx.75246.1.S1_at	AW508335	-	-	2e-14	At1g60800	NIK3 (NSP-INTERACTING KINASE 3)	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.97	Gma.13221.2.S1_at	BU082968	-	-	1e+0	At1g51390	NFU5	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.97	Gma.1155.1.S1_at	BE805343	-	-	6e-6	At1g13750	calcineurin-like phosphoesterase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.5	96.6	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.5	96.6	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.4	96.4	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.2	96.0	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons

Inter-species module comparison

A co-expression module including the barley gene, HV_CEb0023K20r2_at, orthologous to the query gene, GmaAffx.77917.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	HV_CEb0023K20r2_at	At5g13260	-	-	1e+0	At1g76954	-	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig4700_at	At5g13260	-	-	1e-12	At4g01050	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.15	14.1	HC107F06_SK_x_at	At5g13260	-	-	8e-1	At5g45620	26S proteasome regulatory subunit, putative (RPN9)	O.I.	H.G.	S.X.	Please select
0.08	6.5	Contig26614_at	At5g13260	-	-	3e+0	At5g04347	-	O.I.	H.G.	S.X.	Please select
0.03	2.6	Contig25107_at	At5g13260	-	-	2e+0	At4g39235	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	1.1	Contig9703_at	At5g13260	-	-	3e+0	At2g37200	integral membrane protein, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage