Co-expression analysis

Gene ID GmaAffx.77917.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g13260: unknown protein (HF=1e-26)
Module size 6 genes
NF 0.43
%ile 73.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4766.60.97GmaAffx.77917.1.S1_atBU965283--1e-26At5g13260unknown proteinO.I.H.G.S.X.
0.5071.70.97GmaAffx.77917.2.S1_atBM309510--2e-4At3g48860unknown proteinO.I.H.G.S.X.
0.5071.70.97GmaAffx.43012.1.S1_atAW733354--1e-8At2g35110GRL (GNARLED)O.I.H.G.S.X.
0.4057.10.98GmaAffx.75246.1.S1_atAW508335--2e-14At1g60800NIK3 (NSP-INTERACTING KINASE 3)O.I.H.G.S.X.
0.3040.40.97Gma.13221.2.S1_atBU082968--1e+0At1g51390NFU5O.I.H.G.S.X.
0.2939.00.97Gma.1155.1.S1_atBE805343--6e-6At1g13750calcineurin-like phosphoesterase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.596.6GSM309530storage protein suppression expt, RNAi biol rep2, tech rep1GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
3.596.6GSM309557storage protein suppression expt, RNAi biol rep1, tech rep2GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
3.496.4GSM309529storage protein suppression expt, RNAi biol rep1, tech rep1GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
3.296.0GSM309531storage protein suppression expt, RNAi biol rep2, tech rep2GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g13260, orthologous to the query gene, GmaAffx.77917.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At5g13260831167unknown proteinF:unknown;P:biological_process unknown;C:unknown;MFOPBAVO.I.H.G.S.X.
0.5065.3At1g53050841739protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOFBVAO.I.H.G.S.X.
0.4862.5At2g15530816045zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFBVO.I.H.G.S.X.
0.4659.8At2g35100818076ARAD1 (ARABINAN DEFICIENT 1)Putative glycosyltransferase, similar to other CAZy Family 47 proteins. The protein is predicted to be a type 2 membrane protein with a signal anchor and is predicted to be targeted to the secretory pathway and to have a single transmembrane helix near the N terminus; hence, the protein has the features expected for a type II membrane protein targeted to the Golgi vesicles. The gene was shown to be expressed in all tissues but particularly in vascular tissues of leaves and stems.O.I.H.G.S.X.
0.4659.8At1g04910839373unknown proteinF:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;PO.I.H.G.S.X.
0.4558.3At1g67930843121Golgi transport complex protein-relatedF:unknown;P:unknown;C:chloroplast;OMFBPVO.I.H.G.S.X.
0.4355.3At5g61840836306GUT1F:glucuronoxylan glucuronosyltransferase activity, catalytic activity;P:secondary cell wall biogenesis, glucuronoxylan biosynthetic process;C:Golgi apparatus, membrane;PMOBFO.I.H.G.S.X.
0.4253.9At3g03570821234-F:molecular_function unknown;P:biological_process unknown;C:cytosol;MPOO.I.H.G.S.X.
0.4253.9At1g08750837397GPI-anchor transamidase, putativeF:GPI-anchor transamidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MPOFABO.I.H.G.S.X.
0.4253.9At1g35510840444unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.H.G.S.X.
0.4253.9At2g30710817622RabGAP/TBC domain-containing proteinF:RAB GTPase activator activity;P:regulation of Rab GTPase activity;C:intracellular;MOFPO.I.H.G.S.X.
0.4050.8At1g78800844216glycosyl transferase family 1 proteinF:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:cellular_component unknown;BOAPMFO.I.H.G.S.X.
0.4050.8At2g40280818620dehydration-responsive family proteinF:unknown;P:biological_process unknown;C:Golgi apparatus;PBFMOAO.I.H.G.S.X.
0.4050.8At3g26370822241unknown proteinF:unknown;P:unknown;C:Golgi apparatus;PO.I.H.G.S.X.
0.3948.4At1g56590842113clathrin adaptor complexes medium subunit family proteinF:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:clathrin vesicle coat, clathrin adaptor complex;MFOPO.I.H.G.S.X.
0.3948.4At2g28390817387SAND family proteinF:unknown;P:unknown;C:chloroplast;MFOBPAVO.I.H.G.S.X.
0.3948.4At3g01150821129PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.O.I.H.G.S.X.
0.3948.4At4g16650827366unknown proteinF:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;PO.I.H.G.S.X.
0.3948.4At5g28850833004calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MOPFO.I.H.G.S.X.
0.3846.7At4g26640828771WRKY20member of WRKY Transcription Factor; Group IO.I.H.G.S.X.
0.3846.7At4g33650829506DRP3A (DYNAMIN-RELATED PROTEIN 3A)Encodes a protein with high sequence similarity to the dynamin superfamily. Among those members ADL2 was most closely related to Dnm1p of yeast and likely a member of the Vps1p subfamily. Widely expressed in various tissues with highest expression in flower tissues. Localizes to the chloroplast, mitochondrion and peroxisome. Involved in peroxisome and mitochondria fission in combination with DRP3B.O.I.H.G.S.X.
0.3846.7At4g39240830080kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOAVFO.I.H.G.S.X.
0.3745.0At4g18060827531clathrin bindingF:clathrin binding;P:unknown;C:unknown;MOFPBO.I.H.G.S.X.
0.3643.6At1g54610841903protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOFBVAO.I.H.G.S.X.
0.3541.6At5g11490831021adaptin family proteinF:protein transporter activity, protein binding, binding;P:intracellular protein transport, vesicle-mediated transport, protein transport;C:membrane coat, clathrin adaptor complex;MFOPO.I.H.G.S.X.
0.3439.8At4g38200829976guanine nucleotide exchange family proteinF:binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:chloroplast;MFOPBO.I.H.G.S.X.
0.3338.1At5g16280831488unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;MFOPVO.I.H.G.S.X.
0.3235.7At1g14140837973mitochondrial substrate carrier family proteinF:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOVO.I.H.G.S.X.
0.3235.7At4g24840828587-F:molecular_function unknown;P:protein transport, Golgi organization;C:vacuole;MFOPO.I.H.G.S.X.
0.3235.7At5g55500835643XYLT (ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE)Encodes a beta-1,2-xylosyltransferase that is glycosylated at two positions.O.I.H.G.S.X.
0.3235.7At5g27970832867bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MFOPBO.I.H.G.S.X.
0.3235.7At3g63270825502unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.H.G.S.X.
0.3133.8At3g51050824269FG-GAP repeat-containing proteinF:molecular_function unknown;P:cell-matrix adhesion;C:integrin complex, integral to membrane, plasma membrane;OPMO.I.H.G.S.X.
0.3133.8At3g51310824294VPS35C (VPS35 HOMOLOG C)Homolog of yeast retromer subunit VPS35. Part of a retromer-like protein complex involved in endosome to lysosome protein transport.O.I.H.G.S.X.
0.3133.8At1g05500837052NTMC2T2.1F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MPFOO.I.H.G.S.X.
0.3133.8At4g24490828551protein prenyltransferaseF:protein prenyltransferase activity;P:response to cadmium ion;C:unknown;MOFBPAVO.I.H.G.S.X.
0.3032.1At5g63110836431HDA6 (HISTONE DEACETYLASE 6)RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing.O.I.H.G.S.X.
0.2930.3At5g11040830971-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.2930.3At1g55150841958DEAD box RNA helicase, putative (RH20)F:helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAVO.I.H.G.S.X.
0.2930.3At3g33520823150ATARP6Encodes ACTIN-RELATED PROTEIN6 (ARP6), a putative component of a chromatin-remodeling complex. Required for both histone acetylation and methylation of the FLC chromatin in Arabidopsis. Along with PIE1 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6. Located at specific regions of the nuclear periphery. Expression throughout plants shown by in-situ and immunolocalization methods. Mutants show defects in fertility, leaf, flower and inflorescence development and shorter flowering times.O.I.H.G.S.X.
0.2726.2At5g64830836606programmed cell death 2 C-terminal domain-containing proteinF:molecular_function unknown;P:apoptosis;C:cytoplasm;MFOPO.I.H.G.S.X.
0.2522.6At1g13320837892PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3)one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A)O.I.H.G.S.X.
0.2522.6At5g46190834661KH domain-containing proteinF:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBO.I.H.G.S.X.
0.2420.7At1g10430837583PP2A-2Encodes one of two isoforms of the catalytic subunit of protein phosphatase 2A.O.I.H.G.S.X.
0.2319.3At5g58030835915transport protein particle (TRAPP) component Bet3 family proteinF:molecular_function unknown;P:ER to Golgi vesicle-mediated transport;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.2217.5At4g30480829171tetratricopeptide repeat (TPR)-containing proteinF:binding;P:unknown;C:cellular_component unknown;MOPFBAVO.I.H.G.S.X.
0.2014.4At1g43190840918polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:mRNA processing;C:nucleus;MPOFO.I.H.G.S.X.
0.1811.4At5g43940834417HOT5 (sensitive to hot temperatures 5)Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO), the condensation product of glutathione and NO, that is a naturally occurring NO reservoir and also a reactive nitrogen intermediate. Gene expression is reduced by wounding and induced by salicylic acid. Is required for the acclimation of plants to high temperature and for fertility.O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage