Co-expression analysis

Gene ID	GmaAffx.76494.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g03710: SEP4 (SEPALLATA 4) (HF=7e-20)
Module size	8 genes
NF	0.77
%ile	97.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	79.5	0.79	GmaAffx.76494.1.S1_at	AW309024	-	-	7e-20	At2g03710	SEP4 (SEPALLATA 4)	O.I.	H.G.	S.X.	Please select
0.88	93.4	0.83	GmaAffx.55121.1.A1_at	BI970422	-	-	7e-1	At3g10990	F-box family protein	O.I.	H.G.	S.X.	Please select
0.82	91.9	0.79	GmaAffx.22146.1.A1_at	BG653381	-	-	3e-3	At2g22970	serine carboxypeptidase S10 family protein	O.I.	H.G.	S.X.	Please select
0.82	91.9	0.79	Gma.17031.1.A1_at	BE822733	-	-	3e+0	At3g43083	LCR33 (Low-molecular-weight cysteine-rich 33)	O.I.	H.G.	S.X.	Please select
0.82	91.9	0.84	Gma.6760.1.S1_at	BU544178	-	-	1e-42	At4g09960	STK (SEEDSTICK)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.80	GmaAffx.7093.1.S1_at	BM092487	-	-	3e-21	At3g58780	SHP1 (SHATTERPROOF 1)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.83	GmaAffx.52757.1.S1_at	BQ785411	MADS transcription factor	-	9e-40	At1g24260	SEP3 (SEPALLATA3)	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.83	GmaAffx.51641.1.A1_at	BU544035	-	-	4e-1	At5g44574	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.5	99.2	GSM201122	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
9.2	99.2	GSM182037	Laser capture microdissected (LCM) endothelium at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
9.2	99.2	GSM201123	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
8.8	99.1	GSM147952	Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
8.8	99.1	GSM147943	Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
8.7	99.1	GSM182044	Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
8.6	99.1	GSM147942	Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
8.5	99.1	GSM201125	Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
8.2	99.0	GSM182038	Laser capture microdissected (LCM) endothelium at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
8.2	99.0	GSM182043	Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
8.1	99.0	GSM184829	Whole Seed at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
7.9	99.0	GSM147944	Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
7.9	99.0	GSM182041	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
7.9	99.0	GSM147949	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
7.8	99.0	GSM201124	Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
7.8	99.0	GSM191089	Soybean_Cotyledon_OI1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
7.8	99.0	GSM191090	Soybean_Cotyledon_OI2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
7.8	99.0	GSM147948	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
7.6	98.9	GSM191086	Soybean_Cotyledon_HI2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
7.6	98.9	GSM184828	Whole Seed at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
7.5	98.9	GSM191084	Soybean_Cotyledon_EPD2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
7.5	98.9	GSM191081	Soybean_Cotyledon_EN1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
7.4	98.9	GSM147950	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
7.3	98.9	GSM182042	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
7.3	98.9	GSM191088	Soybean_Cotyledon_II2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
7.2	98.9	GSM147953	Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
7.1	98.8	GSM191082	Soybean_Cotyledon_EN2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
7.0	98.8	GSM147951	Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
6.9	98.8	GSM182045	Laser capture microdissected (LCM) outer integument at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
6.9	98.8	GSM191085	Soybean_Cotyledon_HI1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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