Co-expression analysis

Gene ID	GmaAffx.73721.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g24120: ARL1 (ARG1-LIKE 1) (HF=9e-38)
Module size	20 genes
NF	0.36
%ile	64.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.9	0.97	GmaAffx.73721.1.S1_at	BU550998	-	-	9e-38	At1g24120	ARL1 (ARG1-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.58	78.8	0.98	GmaAffx.24357.1.A1_at	BU544827	-	-	3e-4	At3g26935	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.97	Gma.16106.1.S1_at	BF598017	-	-	2e-48	At5g53430	SDG29 (SET DOMAIN GROUP 29)	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.98	GmaAffx.31236.1.A1_at	BE824275	-	-	3e+0	At3g26460	major latex protein-related / MLP-related	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.97	Gma.829.1.A1_at	AW349383	-	-	2e-5	At5g60940	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.98	Gma.4921.1.S1_at	CD396348	-	-	1e-23	At3g54670	TTN8 (TITAN8)	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	Gma.10829.1.S1_at	CD404695	-	-	1e-4	At2g28360	-	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.97	GmaAffx.15226.1.S1_at	BU549489	-	-	2e+0	At5g40620	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.98	Gma.6975.2.S1_a_at	BU546346	-	-	4e-1	At4g35930	-	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.98	GmaAffx.35154.1.A1_at	BU549991	-	-	3e-1	At5g15570	-	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.98	GmaAffx.11747.3.A1_at	BG237380	-	-	4e+0	At2g39310	JAL22 (JACALIN-RELATED LECTIN 22)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.98	Gma.3724.1.S1_at	AW733510	-	-	2e+0	At3g56580	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.98	Gma.1602.1.S1_a_at	BI971053	-	-	2e-171	At3g50000	CKA2 (CASEIN KINASE II, ALPHA CHAIN 2)	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.98	Gma.7858.1.A1_at	AW733417	-	-	5e-3	At1g04230	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.98	Gma.7733.1.S1_at	BU549841	-	-	3e-7	At3g55070	-	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.98	Gma.2835.1.S1_at	BI969866	-	-	4e-40	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.97	Gma.4959.1.A1_s_at	AW310425	-	-	9e-1	At1g26310	CAL (CAULIFLOWER)	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.98	Gma.1925.1.S1_at	AW310700	-	-	5e-33	At1g69010	BIM2 (BES1-interacting Myc-like protein 2)	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.98	Gma.8344.1.S1_a_at	BE658959	-	-	4e-5	At1g77800	PHD finger family protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.98	Gma.8015.1.S1_at	CD402874	-	-	1e-4	At3g19840	FF domain-containing protein / WW domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	96.2	GSM191088	Soybean_Cotyledon_II2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.2	96.0	GSM191087	Soybean_Cotyledon_II1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.1	95.8	GSM182041	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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