Co-expression analysis

Gene ID GmaAffx.73695.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g24650: ABI3 (ABA INSENSITIVE 3) (HF=6e-9)
Module size 6 genes
NF 0.77
%ile 97.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.99GmaAffx.73695.1.S1_atAW471773--6e-9At3g24650ABI3 (ABA INSENSITIVE 3)O.I.H.G.S.X.
0.9198.60.99Gma.1880.2.S1_atAW704809--3e+0At5g25890IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28)O.I.H.G.S.X.
0.8392.50.98GmaAffx.67969.1.S1_atAW395744--8e-2At4g10020AtHSD5 (hydroxysteroid dehydrogenase 5)O.I.H.G.S.X.
0.7790.30.98GmaAffx.57612.1.S1_atAW568460--1e+0At3g43682unknown proteinO.I.H.G.S.X.
0.5778.80.99GmaAffx.84879.1.S1_atAI735921--6e-15At1g17810BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN)O.I.H.G.S.X.
0.4463.30.98Gma.16820.1.S1_s_atX05652.1glycinin A5A4B3 /// A5A4B3 subunits precursor (aa -23 to 539) /// glycinin-5e-3At5g19260unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.899.7GSM309343transgenic RNAiOleosin, biol rep 1, tech rep 1GSE12300Suppression of oleosin in soybean cotyledonLink to GEO
17.399.7GSM309344transgenic RNAiOleosin, biol rep 1, tech rep 2GSE12300Suppression of oleosin in soybean cotyledonLink to GEO
16.499.6GSM309531storage protein suppression expt, RNAi biol rep2, tech rep2GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
15.899.6GSM309341Wild type 1GSE12300Suppression of oleosin in soybean cotyledonLink to GEO
15.299.6GSM309529storage protein suppression expt, RNAi biol rep1, tech rep1GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
15.099.6GSM309342Wild type 2GSE12300Suppression of oleosin in soybean cotyledonLink to GEO
14.799.6GSM309530storage protein suppression expt, RNAi biol rep2, tech rep1GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
14.699.6GSM309528storage protein suppression expt, control tech rep2GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
14.699.6GSM309527storage protein suppression expt, control tech rep1GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
14.399.6GSM309557storage protein suppression expt, RNAi biol rep1, tech rep2GSE12314Storage Protein Suppression in Transgenic Soybean CotyledonsLink to GEO
14.099.6GSM309345transgenic RNAiOleosin, biol rep 2, tech rep 1GSE12300Suppression of oleosin in soybean cotyledonLink to GEO
13.999.6GSM309346transgenic RNAiOleosin, biol rep 2, tech rep 2GSE12300Suppression of oleosin in soybean cotyledonLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1608614_at, orthologous to the query gene, GmaAffx.73695.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8695.11608614_atAt3g24650hypothetical protein LOC100245998-1e-3At2g36460fructose-bisphosphate aldolase, putativeO.I.H.G.S.X.
0.5980.61614662_atAt3g24650hypothetical protein LOC100244419-1e-110At1g79550PGK (PHOSPHOGLYCERATE KINASE)O.I.H.G.S.X.
0.5577.31615745_atAt3g24650hypothetical protein LOC100247371-2e-11At3g1608060S ribosomal protein L37 (RPL37C)O.I.H.G.S.X.
0.4868.81613162_atAt3g24650hypothetical protein LOC100261444-3e-20At4g2623060S ribosomal protein L31 (RPL31B)O.I.H.G.S.X.
0.4767.71621763_s_atAt3g24650hypothetical protein LOC100246745-2e-37At3g49010ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1)O.I.H.G.S.X.
0.4361.51608113_atAt3g24650hypothetical protein LOC100242281-1e-38At1g6743060S ribosomal protein L17 (RPL17B)O.I.H.G.S.X.
0.4361.51609004_s_atAt3g24650similar to Enolase 2-5e-64At2g36530LOS2O.I.H.G.S.X.
0.4260.11608064_atAt3g24650hypothetical protein LOC100254541-3e-30At2g4757060S ribosomal protein L18 (RPL18A)O.I.H.G.S.X.
0.4260.11621039_s_atAt3g24650hypothetical protein LOC100251294-5e-57At4g31700RPS6 (RIBOSOMAL PROTEIN S6)O.I.H.G.S.X.
0.4158.71610560_atAt3g24650hypothetical protein LOC100258347-7e-52At3g4737040S ribosomal protein S20 (RPS20B)O.I.H.G.S.X.
0.4158.71609619_atAt3g24650hypothetical protein LOC100242237-5e-103At5g55190RAN3 (RAN GTPASE 3)O.I.H.G.S.X.
0.4158.71606492_s_atAt3g24650hypothetical protein LOC100245887-4e-35At2g36620RPL24A (ribosomal protein L24)O.I.H.G.S.X.
0.4057.71611713_s_atAt3g24650hypothetical protein LOC100265590-4e-10At1g1593040S ribosomal protein S12 (RPS12A)O.I.H.G.S.X.
0.3954.91622420_atAt3g24650hypothetical protein LOC100255637-8e-2At1g0110060S acidic ribosomal protein P1 (RPP1A)O.I.H.G.S.X.
0.3954.91608096_atAt3g24650hypothetical protein LOC100264515-6e-59At5g3985040S ribosomal protein S9 (RPS9C)O.I.H.G.S.X.
0.3751.71610875_atAt3g24650similar to coatomer protein epsilon subunit family protein / COPE family protein-2e-68At1g30630coatomer protein epsilon subunit family protein / COPE family proteinO.I.H.G.S.X.
0.3039.41610095_s_atAt3g24650hypothetical protein LOC100257471-9e-49At5g2390060S ribosomal protein L13 (RPL13D)O.I.H.G.S.X.
0.3039.41616740_s_atAt3g24650similar to ADP-ribosylation factor-3e-110At5g14670ATARFA1B (ADP-ribosylation factor A1B)O.I.H.G.S.X.
0.3039.41610354_s_atAt3g24650hypothetical protein LOC100244095-1e-50At3g48930EMB1080 (embryo defective 1080)O.I.H.G.S.X.
0.3039.41610389_s_atAt3g24650hypothetical protein LOC100261052-1e-13At4g1500060S ribosomal protein L27 (RPL27C)O.I.H.G.S.X.
0.2837.71608087_s_atAt3g24650glyceraldehyde-3-phosphate dehydrogenase-2e-103At1g13440GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)O.I.H.G.S.X.
0.2837.71613860_s_atAt3g24650cyc07-6e-38At3g0484040S ribosomal protein S3A (RPS3aA)O.I.H.G.S.X.
0.2632.01614221_atAt3g24650hypothetical protein LOC100247241-7e-75At5g13420transaldolase, putativeO.I.H.G.S.X.
0.2530.51621535_s_atAt3g24650hypothetical protein LOC100247214-6e-87At2g18020EMB2296 (embryo defective 2296)O.I.H.G.S.X.
0.2428.71610630_atAt3g24650hypothetical protein LOC100260347-3e-14At3g5634040S ribosomal protein S26 (RPS26C)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage