CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID GmaAffx.73695.1.S1_at

Gene name
Homology with Arabidopsis Similar to At3g24650: ABI3 (ABA INSENSITIVE 3) (HF=6e-9)

Module size 6 genes

NF 0.77

%ile 97.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.6 0.99 GmaAffx.73695.1.S1_at AW471773 - - 6e-9 At3g24650 ABI3 (ABA INSENSITIVE 3) O.I. H.G. S.X.
0.91 98.6 0.99 Gma.1880.2.S1_at AW704809 - - 3e+0 At5g25890 IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28) O.I. H.G. S.X.
0.83 92.5 0.98 GmaAffx.67969.1.S1_at AW395744 - - 8e-2 At4g10020 AtHSD5 (hydroxysteroid dehydrogenase 5) O.I. H.G. S.X.
0.77 90.3 0.98 GmaAffx.57612.1.S1_at AW568460 - - 1e+0 At3g43682 unknown protein O.I. H.G. S.X.
0.57 78.8 0.99 GmaAffx.84879.1.S1_at AI735921 - - 6e-15 At1g17810 BETA-TIP (BETA-TONOPLAST INTRINSIC PROTEIN) O.I. H.G. S.X.
0.44 63.3 0.98 Gma.16820.1.S1_s_at X05652.1 glycinin A5A4B3 /// A5A4B3 subunits precursor (aa -23 to 539) /// glycinin - 5e-3 At5g19260 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.8 99.7 GSM309343 transgenic RNAiOleosin, biol rep 1, tech rep 1 GSE12300 Suppression of oleosin in soybean cotyledon
17.3 99.7 GSM309344 transgenic RNAiOleosin, biol rep 1, tech rep 2 GSE12300 Suppression of oleosin in soybean cotyledon
16.4 99.6 GSM309531 storage protein suppression expt, RNAi biol rep2, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
15.8 99.6 GSM309341 Wild type 1 GSE12300 Suppression of oleosin in soybean cotyledon
15.2 99.6 GSM309529 storage protein suppression expt, RNAi biol rep1, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
15.0 99.6 GSM309342 Wild type 2 GSE12300 Suppression of oleosin in soybean cotyledon
14.7 99.6 GSM309530 storage protein suppression expt, RNAi biol rep2, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
14.6 99.6 GSM309528 storage protein suppression expt, control tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
14.6 99.6 GSM309527 storage protein suppression expt, control tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
14.3 99.6 GSM309557 storage protein suppression expt, RNAi biol rep1, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
14.0 99.6 GSM309345 transgenic RNAiOleosin, biol rep 2, tech rep 1 GSE12300 Suppression of oleosin in soybean cotyledon
13.9 99.6 GSM309346 transgenic RNAiOleosin, biol rep 2, tech rep 2 GSE12300 Suppression of oleosin in soybean cotyledon

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.144743.1.S1_at, orthologous to the query gene, GmaAffx.73695.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 PtpAffx.144743.1.S1_at At3g24650 hypothetical protein - 1e-68 At3g24650 ABI3 (ABA INSENSITIVE 3) O.I. H.G. S.X.
0.83 97.0 PtpAffx.77851.1.A1_at At3g24650 - - 2e-1 At2g03110 RNA binding / nucleic acid binding O.I. H.G. S.X.
0.61 87.0 PtpAffx.202241.1.S1_at At3g24650 hypothetical protein - 5e-1 At5g19850 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.61 87.0 PtpAffx.224493.1.S1_at At3g24650 cytochrome P450 - 2e-1 At5g57260 CYP71B10 O.I. H.G. S.X.
0.55 82.2 PtpAffx.204373.1.S1_x_at At3g24650 hypothetical protein - 8e+0 At5g36140 CYP716A2 O.I. H.G. S.X.
0.55 82.2 PtpAffx.203544.1.S1_at At3g24650 hypothetical protein - 2e-23 At3g54510 early-responsive to dehydration protein-related / ERD protein-related O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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