Co-expression analysis

Gene ID	GmaAffx.73377.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g07380: unknown protein (HF=2e-1)
Module size	6 genes
NF	0.06
%ile	19.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.90	GmaAffx.73377.1.A1_at	BI969520	-	-	2e-1	At4g07380	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	19.7	0.95	Gma.8474.1.S1_at	AF322633.1	L33 protein	-	5e-4	At5g17680	disease resistance protein (TIR-NBS-LRR class), putative	O.I.	H.G.	S.X.	Please select
0.11	14.2	0.97	Gma.12059.1.S1_at	BG651492	-	-	2e+0	At4g01430	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.97	GmaAffx.2122.1.S1_at	BI498615	-	-	5e-1	At3g21215	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.07	10.2	0.97	Gma.2338.3.S1_at	BI426604	-	-	3e-48	At5g10980	histone H3	O.I.	H.G.	S.X.	Please select
0.01	3.4	0.97	Gma.1925.1.S1_at	AW310700	-	-	5e-33	At1g69010	BIM2 (BES1-interacting Myc-like protein 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	97.1	GSM147935	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.8	97.0	GSM201105	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.7	96.8	GSM191087	Soybean_Cotyledon_II1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.7	96.8	GSM191088	Soybean_Cotyledon_II2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.6	96.7	GSM201104	Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.4	96.4	GSM182043	Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.4	96.4	GSM201122	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.1	95.8	GSM201123	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.1	95.8	GSM182041	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.1	95.8	GSM182044	Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.1	95.8	GSM201125	Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage