Co-expression analysis

Gene ID	GmaAffx.73080.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g21620: glycine-rich protein (HF=2e-1)
Module size	7 genes
NF	0.71
%ile	95.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	89.5	0.97	GmaAffx.73080.1.S1_at	BI427357	-	-	2e-1	At4g21620	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.86	93.0	0.98	Gma.13878.1.S1_at	CD408791	-	-	5e+0	At5g01070	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.86	93.0	0.98	GmaAffx.36562.2.S1_at	BM731207	-	-	5e-15	At1g14970	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.98	GmaAffx.82262.1.S1_at	BI786890	-	-	3e-28	At3g51770	ETO1 (ETHYLENE OVERPRODUCER 1)	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.97	GmaAffx.51022.1.S1_at	BM519886	-	-	9e-1	At3g25920	RPL15	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	GmaAffx.23963.1.S1_at	BQ080815	-	-	3e+0	At3g42310	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	GmaAffx.39172.1.S1_at	BM094230	-	-	2e-5	At1g12340	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
38.4	99.9	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
27.1	99.8	GSM308559	Mature Soybean (Glycine max) pollen grains Replicate 2	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
26.5	99.8	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen

Inter-species module comparison

A co-expression module including the barley gene, Contig16388_at, orthologous to the query gene, GmaAffx.73080.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	74.9	Contig16388_at	At4g21620	-	-	2e+0	At1g05385	photosystem II 11 kDa protein-related	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig18299_at	At4g21620	-	-	3e-7	At5g66540	-	O.I.	H.G.	S.X.	Please select
0.05	4.1	HVSMEg0007B03f_at	At4g21620	autophagy protein 9	-	3e+0	At4g36060	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.02	1.8	Contig1867_at	At4g21620	-	-	1e-2	At1g14540	anionic peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.01	1.1	HVSMEn0006A08f2_s_at	At4g21620	-	-	4e+0	At3g14595	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	1.1	Contig23643_at	At4g21620	-	-	2e+0	At5g48230	ACAT2 (ACETOACETYL-COA THIOLASE 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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