CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID GmaAffx.73080.1.S1_at

Gene name
Homology with Arabidopsis Similar to At4g21620: glycine-rich protein (HF=2e-1)

Module size 7 genes

NF 0.71

%ile 95.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.75 89.5 0.97 GmaAffx.73080.1.S1_at BI427357 - - 2e-1 At4g21620 glycine-rich protein O.I. H.G. S.X.
0.86 93.0 0.98 Gma.13878.1.S1_at CD408791 - - 5e+0 At5g01070 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.86 93.0 0.98 GmaAffx.36562.2.S1_at BM731207 - - 5e-15 At1g14970 unknown protein O.I. H.G. S.X.
0.67 86.1 0.98 GmaAffx.82262.1.S1_at BI786890 - - 3e-28 At3g51770 ETO1 (ETHYLENE OVERPRODUCER 1) O.I. H.G. S.X.
0.53 74.2 0.97 GmaAffx.51022.1.S1_at BM519886 - - 9e-1 At3g25920 RPL15 O.I. H.G. S.X.
0.50 71.7 0.98 GmaAffx.23963.1.S1_at BQ080815 - - 3e+0 At3g42310 unknown protein O.I. H.G. S.X.
0.50 71.7 0.98 GmaAffx.39172.1.S1_at BM094230 - - 2e-5 At1g12340 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
38.4 99.9 GSM308556 Mature Soybean (Glycine max) pollen grains replicate 1 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
27.1 99.8 GSM308559 Mature Soybean (Glycine max) pollen grains Replicate 2 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
26.5 99.8 GSM308560 Mature Soybean (Glycine max) pollen grains Replicate 3 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g21620, orthologous to the query gene, GmaAffx.73080.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.25 22.6 At4g21620 828249 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBOFVA O.I. H.G. S.X.
0.33 38.1 At3g61550 825328 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. H.G. S.X.
0.33 38.1 At4g33220 829458 enzyme inhibitor/ pectinesterase F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM O.I. H.G. S.X.
0.31 33.8 At5g14410 831292 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.25 22.6 At3g43720 823481 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane, membrane;P O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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