Co-expression analysis

Gene ID	GmaAffx.72561.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g17310: unknown protein (HF=2e-10)
Module size	35 genes
NF	0.49
%ile	79.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.8	0.96	GmaAffx.72561.2.S1_at	BG155858	-	-	2e-10	At4g17310	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.98	Gma.11173.1.S1_x_at	CD399794	-	-	6e-9	At3g49910	60S ribosomal protein L26 (RPL26A)	O.I.	H.G.	S.X.	Please select
0.62	82.1	0.97	GmaAffx.89095.1.S1_s_at	CK605629	-	-	7e-46	At5g20290	40S ribosomal protein S8 (RPS8A)	O.I.	H.G.	S.X.	Please select
0.58	78.8	0.97	GmaAffx.89930.1.S1_s_at	CF805655	-	-	2e-26	At3g59540	60S ribosomal protein L38 (RPL38B)	O.I.	H.G.	S.X.	Please select
0.58	78.8	0.98	Gma.10596.1.S1_at	CD399436	-	-	4e-44	At3g59540	60S ribosomal protein L38 (RPL38B)	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.98	Gma.11290.1.S1_x_at	CD390917	-	-	1e-40	At3g53430	60S ribosomal protein L12 (RPL12B)	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.97	Gma.5688.1.S1_at	AW568434	-	-	8e-28	At3g57490	40S ribosomal protein S2 (RPS2D)	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.97	Gma.6820.1.S1_at	AI416867	-	-	1e-13	At1g03860	ATPHB2 (PROHIBITIN 2)	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.97	GmaAffx.8692.2.S1_at	AW133381	-	-	4e-19	At4g22000	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.97	Gma.6404.1.S1_at	BQ611306	-	-	1e-7	At2g32060	40S ribosomal protein S12 (RPS12C)	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.98	Gma.16202.1.S1_at	BI427211	-	-	5e-44	At2g39460	RPL23AA (RIBOSOMAL PROTEIN L23AA)	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.98	Gma.3019.1.S1_at	CD391304	-	-	4e-19	At3g22230	60S ribosomal protein L27 (RPL27B)	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.98	Gma.10577.1.S1_at	CD416202	-	-	7e-49	At1g23290	RPL27AB	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.98	Gma.11173.1.S1_at	CD399794	-	-	6e-9	At3g49910	60S ribosomal protein L26 (RPL26A)	O.I.	H.G.	S.X.	Please select
0.52	73.1	0.98	Gma.6740.1.S1_a_at	CD397282	-	-	5e-83	At4g14320	60S ribosomal protein L36a/L44 (RPL36aB)	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.98	Gma.6163.1.S1_at	CB063421	-	-	7e-3	At4g29410	60S ribosomal protein L28 (RPL28C)	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.97	Gma.15892.1.S1_at	AW348645	-	-	1e+0	At4g34265	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.98	GmaAffx.89925.1.S1_x_at	CF805650	40S ribosomal S4 protein	-	2e-20	At5g07090	40S ribosomal protein S4 (RPS4B)	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.98	Gma.11050.1.S1_a_at	CD415224	-	-	3e-8	At3g49910	60S ribosomal protein L26 (RPL26A)	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.98	Gma.1310.1.S1_s_at	BM523799	-	-	3e-17	At1g27400	60S ribosomal protein L17 (RPL17A)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.98	GmaAffx.92687.1.S1_s_at	CF808962	-	-	1e-28	At1g48830	40S ribosomal protein S7 (RPS7A)	O.I.	H.G.	S.X.	Please select
0.45	63.9	0.98	Gma.6740.1.S1_x_at	CD397282	-	-	5e-83	At4g14320	60S ribosomal protein L36a/L44 (RPL36aB)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.98	Gma.15789.3.S1_s_at	BM568081	-	-	6e-81	At3g11940	ATRPS5A (RIBOSOMAL PROTEIN 5A)	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.98	Gma.16192.1.S1_at	BG507769	-	-	2e-58	At2g47610	60S ribosomal protein L7A (RPL7aA)	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.98	Gma.3002.1.S1_at	BI967272	-	-	5e-44	At4g25740	40S ribosomal protein S10 (RPS10A)	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.98	Gma.11290.1.S1_at	CD390917	-	-	1e-40	At3g53430	60S ribosomal protein L12 (RPL12B)	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.98	Gma.17644.1.S1_at	BU090070	-	-	3e-4	At2g27710	60S acidic ribosomal protein P2 (RPP2B)	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	Gma.11033.1.S1_at	AW349147	-	-	8e-15	At4g17390	60S ribosomal protein L15 (RPL15B)	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.98	Gma.1549.1.S1_at	BI969619	-	-	1e-156	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.97	Gma.10687.1.S1_at	CD415391	-	-	4e-47	At1g54690	GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX)	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.97	Gma.6395.1.S1_at	BU547039	-	-	1e-65	At4g02930	elongation factor Tu, putative / EF-Tu, putative	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.97	Gma.1341.1.S1_a_at	AW350307	-	-	1e-3	At2g33847	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.98	Gma.11172.2.S1_at	CD395158	-	-	5e-19	At5g04800	40S ribosomal protein S17 (RPS17D)	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.97	Gma.3183.1.S1_a_at	BE822841	-	-	2e-14	At3g20050	ATTCP-1	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.98	Gma.2881.2.S1_s_at	CD412647	-	-	6e-31	At4g25740	40S ribosomal protein S10 (RPS10A)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	98.5	GSM267288	Axillary meristem from 10-day-old soybean seedlings repliacte 2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
5.7	98.4	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
5.7	98.4	GSM237069	Soy_shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.8	97.9	GSM267287	Axillary meristem from 10-day-old soybean seedlings	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.7	97.8	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
4.6	97.7	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
4.5	97.7	GSM258501	Soybean shoot apical meristem, 1 short-day treatment replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
4.2	97.4	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
4.1	97.3	GSM309528	storage protein suppression expt, control tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
4.0	97.2	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
4.0	97.2	GSM309527	storage protein suppression expt, control tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
4.0	97.2	GSM258503	Soybean shoot apical meristem, 2 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.9	97.1	GSM258497	Soybean Shoot Apical Meristem, 1 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.9	97.1	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.9	97.1	GSM309341	Wild type 1	GSE12300	Suppression of oleosin in soybean cotyledon
3.9	97.1	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.7	96.8	GSM258498	Soybean shoot apical meristem, 2 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.7	96.8	GSM309342	Wild type 2	GSE12300	Suppression of oleosin in soybean cotyledon
3.7	96.8	GSM292243	56_C025.1B.SLB2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM258500	Soybean shoot apical meristem, 6 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.6	96.7	GSM293148	5_1147.1O.R093U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.6	96.7	GSM258504	Soybean shoot apical meristem, 4 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.5	96.6	GSM294048	97_2249.2F.R268L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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