Co-expression analysis

Gene ID GmaAffx.72230.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g07990: SCPL27 (serine carboxypeptidase-like 27) (HF=1e-3)
Module size 6 genes
NF 0.42
%ile 72.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5374.20.84GmaAffx.72230.1.S1_atBF009687--1e-3At3g07990SCPL27 (serine carboxypeptidase-like 27)O.I.H.G.S.X.
0.5778.80.83GmaAffx.66424.1.S1_atAW306696--3e-2At3g50770calmodulin-related protein, putativeO.I.H.G.S.X.
0.5576.30.89GmaAffx.3364.1.A1_atBE347229--8e-2At4g15100scpl30 (serine carboxypeptidase-like 30)O.I.H.G.S.X.
0.5374.20.82GmaAffx.50670.1.A1_atBI970234--8e-1At1g18630GR-RBP6 (glycine-rich RNA-binding protein 6)O.I.H.G.S.X.
0.2228.10.85Gma.17993.1.S1_atBQ628525--2e+0At4g38660thaumatin, putativeO.I.H.G.S.X.
0.1721.20.85GmaAffx.17452.1.S1_atAW458587--2e-1At3g12370ribosomal protein L10 family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.799.7GSM209598resistant_48hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
11.199.4GSM209599susceptible_48hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
3.997.1GSM29429749_2429.2I.R158L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.696.7GSM29351330_2029.2A.R045L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.396.2GSM29352138_2003.2A.R270L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.396.2GSM29360333_2059.2B.R199L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.396.2GSM29309915_1129.1O.R082L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.296.0GSM29338771_1569.1Q.R157L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.296.0GSM309345transgenic RNAiOleosin, biol rep 2, tech rep 1GSE12300Suppression of oleosin in soybean cotyledonLink to GEO
3.195.8GSM29312942_1127.1O.R081L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.195.8GSM309346transgenic RNAiOleosin, biol rep 2, tech rep 2GSE12300Suppression of oleosin in soybean cotyledonLink to GEO
3.095.6GSM29349817_2003.2A.R270U, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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