Co-expression analysis

Gene ID	GmaAffx.71462.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g43230: unknown protein (HF=5e-6)
Module size	6 genes
NF	0.20
%ile	43.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	71.7	0.97	GmaAffx.71462.1.S1_at	BM308753	-	-	5e-6	At5g43230	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.98	GmaAffx.4245.5.S1_s_at	BI787772	-	-	3e+0	At1g29962	AGL64 (AGAMOUS-LIKE 64)	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.98	GmaAffx.45359.2.S1_at	BQ453165	-	-	1e-60	At4g28540	CKL6 (CASEIN KINASE I-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.97	Gma.4761.1.S1_a_at	CD413738	-	-	6e-6	At5g27620	CYCH	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.98	GmaAffx.71580.1.S1_at	AW832468	-	-	5e-77	At2g16920	UBC23 (UBIQUITIN-CONJUGATING ENZYME 23)	O.I.	H.G.	S.X.	Please select
0.10	13.0	0.97	Gma.7017.2.S1_s_at	BM269658	-	-	3e+0	At4g22570	APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.208241.1.S1_s_at, orthologous to the query gene, GmaAffx.71462.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	99.5	PtpAffx.208241.1.S1_s_at	At5g43230	hypothetical protein	-	1e-20	At5g43230	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	Ptp.4743.1.S1_at	At5g43230	hypothetical protein	-	7e-9	At1g54610	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	Ptp.566.1.A1_at	At5g43230	hypothetical protein	-	8e-28	At5g18900	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.20146.1.S1_at	At5g43230	hypothetical protein	-	7e-1	At3g49780	ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.74706.1.A1_s_at	At5g43230	hypothetical protein	-	7e-30	At3g17210	HS1 (HEAT STABLE PROTEIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	PtpAffx.5895.1.S1_at	At5g43230	calcium dependent protein kinase 22 /// calcium dependent protein kinase 3	-	8e-24	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	PtpAffx.147608.1.A1_at	At5g43230	hypothetical protein	-	8e-34	At2g01940	nucleic acid binding / transcription factor/ zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	Ptp.649.1.A1_s_at	At5g43230	hypothetical protein	-	9e-18	At2g37110	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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