Co-expression analysis

Gene ID	GmaAffx.71462.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g43230: unknown protein (HF=5e-6)
Module size	6 genes
NF	0.20
%ile	43.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	71.7	0.97	GmaAffx.71462.1.S1_at	BM308753	-	-	5e-6	At5g43230	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.98	GmaAffx.4245.5.S1_s_at	BI787772	-	-	3e+0	At1g29962	AGL64 (AGAMOUS-LIKE 64)	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.98	GmaAffx.45359.2.S1_at	BQ453165	-	-	1e-60	At4g28540	CKL6 (CASEIN KINASE I-LIKE 6)	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.97	Gma.4761.1.S1_a_at	CD413738	-	-	6e-6	At5g27620	CYCH	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.98	GmaAffx.71580.1.S1_at	AW832468	-	-	5e-77	At2g16920	UBC23 (UBIQUITIN-CONJUGATING ENZYME 23)	O.I.	H.G.	S.X.	Please select
0.10	13.0	0.97	Gma.7017.2.S1_s_at	BM269658	-	-	3e+0	At4g22570	APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig9847_s_at, orthologous to the query gene, GmaAffx.71462.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.0	Contig9847_s_at	At5g43230	-	-	1e+0	At3g20395	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.80	92.5	EBed02_SQ003_E11_at	At5g43230	-	-	3e+0	At5g21010	ATBPM5 (BTB-POZ and MATH domain 5)	O.I.	H.G.	S.X.	Please select
0.80	92.5	Contig18933_at	At5g43230	-	-	7e-5	At1g74530	unknown protein	O.I.	H.G.	S.X.	Please select
0.76	89.8	Contig3751_at	At5g43230	-	-	2e+0	At5g24170	-	O.I.	H.G.	S.X.	Please select
0.75	89.5	EBed02_SQ002_E13_x_at	At5g43230	-	-	2e+0	At2g44745	WRKY family transcription factor	O.I.	H.G.	S.X.	Please select
0.74	89.1	Contig19910_at	At5g43230	-	-	3e-1	At3g57950	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	Contig8334_s_at	At5g43230	-	-	1e+0	At1g29810	dehydratase family	O.I.	H.G.	S.X.	Please select
0.73	88.7	HA24A17r_at	At5g43230	-	-	3e+0	At5g35069	unknown protein	O.I.	H.G.	S.X.	Please select
0.70	86.0	Contig5773_s_at	At5g43230	-	-	5e-1	At2g04240	XERICO	O.I.	H.G.	S.X.	Please select
0.70	86.0	Contig23802_at	At5g43230	-	-	3e-20	At2g22310	ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4)	O.I.	H.G.	S.X.	Please select
0.69	85.5	Contig8304_s_at	At5g43230	-	-	1e+0	At4g27280	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	Contig14983_at	At5g43230	-	-	5e+0	At5g30520	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	Contig16510_at	At5g43230	-	-	9e+0	At5g18540	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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