Co-expression analysis

Gene ID	GmaAffx.70346.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g01940: NFU1 (HF=5e+0)
Module size	19 genes
NF	0.31
%ile	58.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	81.8	0.96	GmaAffx.70346.1.S1_at	BU964958	-	-	5e+0	At4g01940	NFU1	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.97	GmaAffx.48654.1.S1_at	AW666286	-	-	2e-36	At1g20760	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.97	GmaAffx.77910.2.S1_at	BM091913	-	-	1e-8	At4g02480	AAA-type ATPase family protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.97	GmaAffx.77910.1.S1_at	BM086647	-	-	1e+0	At1g60970	clathrin adaptor complex small chain family protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.97	GmaAffx.87671.1.S1_at	BQ452758	-	-	3e+0	At2g10020	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.97	GmaAffx.8829.1.S1_at	BG405593	-	-	5e-14	At1g08680	ZIGA4 (ARF GAP-like zinc finger-containing protein ZiGA4)	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.97	GmaAffx.62931.1.S1_at	AW705455	-	-	8e-18	At5g63190	MA3 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.97	GmaAffx.42120.1.S1_at	BQ081711	-	-	2e-1	At3g26690	ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13)	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.97	Gma.4422.1.S1_at	CA801775	-	-	3e+0	At5g39820	anac094 (Arabidopsis NAC domain containing protein 94)	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.97	GmaAffx.82274.1.S1_at	BI787457	-	-	2e-1	At1g72860	disease resistance protein (TIR-NBS-LRR class), putative	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.98	GmaAffx.21491.1.S1_at	AW832637	-	-	3e+0	At5g49480	ATCP1 (Ca2+-binding protein 1)	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.97	GmaAffx.90275.1.S1_at	CF806000	-	-	8e-2	At3g13460	ECT2	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.97	GmaAffx.58743.1.S1_at	BI321215	-	-	1e-12	At5g50530	CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.97	GmaAffx.297.2.S1_at	BQ741350	-	-	1e-12	At2g16950	TRN1 (TRANSPORTIN 1)	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.98	Gma.1752.3.S1_a_at	AW569205	-	-	5e-2	At4g04860	DER2.2 (DERLIN-2.2)	O.I.	H.G.	S.X.	Please select
0.20	25.1	0.98	GmaAffx.15284.2.S1_at	BU927192	-	-	9e-1	At5g12880	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.97	GmaAffx.45372.1.S1_at	AI737036	-	-	2e-43	At2g47960	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	19.7	0.97	GmaAffx.16446.2.S1_at	BM887043	-	-	9e-7	At5g56180	ATARP8 (ACTIN-RELATED PROTEIN 8)	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.97	GmaAffx.21722.1.S1_at	BE440485	-	-	4e+0	At1g06090	fatty acid desaturase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	96.4	GSM294244	92_2340.2H.R202P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM293419	10_C108.1R.R9R3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM292768	30_C198.1K.R9K3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM294132	86_3112.2G.R9G1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM292825	82_C184.1K.R9K1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM293060	61_C034.1N.R9N3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM294310	60_3154.2I.R9I2P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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