Co-expression analysis

Gene ID	GmaAffx.69670.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g22670: AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1) (HF=7e-5)
Module size	7 genes
NF	0.51
%ile	82.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	74.2	0.98	GmaAffx.69670.1.S1_at	BQ742118	-	-	7e-5	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.98	GmaAffx.67700.1.S1_at	CB063625	-	-	9e-1	At5g13620	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.98	GmaAffx.91473.1.S1_at	CF807198	-	-	3e-22	At4g28860	ckl4 (Casein Kinase I-like 4)	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.98	GmaAffx.90745.1.S1_s_at	CF806470	-	-	4e+0	At5g42235	Expressed protein	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.98	GmaAffx.83672.1.S1_at	BU926827	-	-	2e-51	At2g26000	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.98	GmaAffx.4382.3.S1_at	CA784372	-	-	9e-18	At1g18470	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.98	GmaAffx.40419.1.S1_at	BF325410	-	-	1e-11	At3g03570	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	96.2	GSM293911	5_2236.2E.R249P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293718	53_2144.2C.R109P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293060	61_C034.1N.R9N3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM292825	82_C184.1K.R9K1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the maize gene, Zm.15768.1.A1_at, orthologous to the query gene, GmaAffx.69670.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.2	Zm.15768.1.A1_at	At4g22670	hypothetical protein LOC100194013	-	3e-14	At2g21190	ER lumen protein retaining receptor family protein	O.I.	H.G.	S.X.	Please select
0.75	90.8	Zm.4536.1.S1_at	At4g22670	kinesin heavy chain isolog	-	7e-4	At1g20220	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.63	81.1	Zm.9288.1.A1_at	At4g22670	-	-	9e+0	At5g03060	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	Zm.2823.1.A1_at	At4g22670	ankyrin protein kinase-like	-	2e+1	At5g40260	nodulin MtN3 family protein	O.I.	H.G.	S.X.	Please select
0.56	74.4	Zm.5070.1.A1_at	At4g22670	hypothetical protein LOC100193023	-	2e-16	At1g22950	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	O.I.	H.G.	S.X.	Please select
0.54	69.8	Zm.10867.1.A1_at	At4g22670	-	-	8e-2	At2g20350	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.54	69.8	Zm.5048.1.A1_a_at	At4g22670	-	-	2e-96	At5g58420	40S ribosomal protein S4 (RPS4D)	O.I.	H.G.	S.X.	Please select
0.53	69.1	Zm.12369.1.S1_at	At4g22670	-	-	2e+1	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.51	66.4	Zm.7770.1.A1_at	At4g22670	hypothetical protein LOC100274956	-	7e-1	At1g53935	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	Zm.15697.1.A1_at	At4g22670	hypothetical protein LOC100191504	-	3e-2	At5g63150	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	61.9	Zm.16892.2.A1_at	At4g22670	-	-	3e-6	At3g09710	IQD1 (IQ-DOMAIN 1)	O.I.	H.G.	S.X.	Please select
0.46	58.4	Zm.12546.2.A1_a_at	At4g22670	ATP binding protein	-	3e+0	At5g56150	UBC30 (ubiquitin-conjugating enzyme 30)	O.I.	H.G.	S.X.	Please select
0.44	55.7	ZmAffx.1087.1.S1_s_at	At4g22670	herbicide safener binding protein1	-	5e+0	At4g19690	IRT1 (iron-regulated transporter 1)	O.I.	H.G.	S.X.	Please select
0.44	55.7	Zm.5313.2.A1_at	At4g22670	60S ribosomal protein L12	-	9e-9	At2g37190	60S ribosomal protein L12 (RPL12A)	O.I.	H.G.	S.X.	Please select
0.43	52.8	ZmAffx.900.1.S1_at	At4g22670	-	-	1e+1	At5g19480	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.599.1.S1_x_at	At4g22670	chromomethylase	-	2e+0	At5g49330	AtMYB111 (myb domain protein 111)	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.18239.1.S1_at	At4g22670	sugar carrier protein C	-	1e-1	At5g41090	anac095 (Arabidopsis NAC domain containing protein 95)	O.I.	H.G.	S.X.	Please select
0.34	37.2	ZmAffx.525.1.A1_at	At4g22670	-	-	8e-1	At5g23170	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	Zm.6532.4.S1_a_at	At4g22670	dehydrin 13	-	9e-2	At1g20440	COR47 (COLD-REGULATED 47)	O.I.	H.G.	S.X.	Please select
0.31	31.6	Zm.11611.1.A1_at	At4g22670	hypothetical protein LOC100192942	-	5e+0	At1g07400	17.8 kDa class I heat shock protein (HSP17.8-CI)	O.I.	H.G.	S.X.	Please select
0.29	28.1	ZmAffx.732.1.A1_at	At4g22670	-	-	5e+0	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	O.I.	H.G.	S.X.	Please select
0.27	24.6	Zm.18038.1.S1_at	At4g22670	-	-	2e+1	At5g66700	HB53	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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