CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID GmaAffx.69670.1.S1_at

Gene name
Homology with Arabidopsis Similar to At4g22670: AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1) (HF=7e-5)

Module size 7 genes

NF 0.51

%ile 82.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 74.2 0.98 GmaAffx.69670.1.S1_at BQ742118 - - 7e-5 At4g22670 AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1) O.I. H.G. S.X.
0.67 86.1 0.98 GmaAffx.67700.1.S1_at CB063625 - - 9e-1 At5g13620 unknown protein O.I. H.G. S.X.
0.53 74.2 0.98 GmaAffx.91473.1.S1_at CF807198 - - 3e-22 At4g28860 ckl4 (Casein Kinase I-like 4) O.I. H.G. S.X.
0.48 67.7 0.98 GmaAffx.90745.1.S1_s_at CF806470 - - 4e+0 At5g42235 Expressed protein O.I. H.G. S.X.
0.48 67.7 0.98 GmaAffx.83672.1.S1_at BU926827 - - 2e-51 At2g26000 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.44 63.3 0.98 GmaAffx.4382.3.S1_at CA784372 - - 9e-18 At1g18470 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.36 50.8 0.98 GmaAffx.40419.1.S1_at BF325410 - - 1e-11 At3g03570 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.3 96.2 GSM293911 5_2236.2E.R249P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2 96.0 GSM293718 53_2144.2C.R109P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2 96.0 GSM293060 61_C034.1N.R9N3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0 95.6 GSM292825 82_C184.1K.R9K1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the rice gene, Os09g0401200, orthologous to the query gene, GmaAffx.69670.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 91.1 Os09g0401200 At4g22670 - Tetratricoredoxin 5e-8 At4g22670 AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1) O.I. H.G. S.X.
0.46 60.9 Os04g0619500 At4g22670 - Ovarian tumour, otubain domain containing protein 3e-3 At3g62940 OTU-like cysteine protease family protein O.I. H.G. S.X.
0.42 53.9 Os07g0669600 At4g22670 - Conserved hypothetical protein 2e+0 At1g05450 protease inhibitor/seed storage/lipid transfer protein (LTP)-related O.I. H.G. S.X.
0.38 46.9 Os03g0811600 At4g22670 - Peptidyl-prolyl cis-trans isomerase H (EC 5.2.1.8)(PPIase H) (Rotamase H) (U-snRNP-associated cyclophilinSnuCyp-20) (USA-CYP) (Small nuclear ribonucleoproteinparticle-specific cyclophilin H) (CypH) 2e-16 At2g38730 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative O.I. H.G. S.X.
0.29 31.1 Os05g0357600 At4g22670 - Developmentally regulated GTP binding protein 7e-159 At1g72660 developmentally regulated GTP-binding protein, putative O.I. H.G. S.X.
0.21 17.9 Os03g0831900 At4g22670 - Zn-finger, C2H2 type domain containing protein 5e-23 At3g05760 nucleic acid binding / zinc ion binding O.I. H.G. S.X.
0.10 5.7 Os10g0486900 At4g22670 - TPR-like domain containing protein 1e-1 At2g23920 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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